| add_features_reporter(FeaturesReporterOP features_reporter) | protocols::features::ReportToDB | |
| apply(Pose &pose) override | protocols::features::TrajectoryReportToDB | virtual |
| attributes_for_report_to_db(utility::tag::AttributeList &, utility::tag::XMLSchemaDefinition &) | protocols::features::ReportToDB | static |
| batch_description_ | protocols::features::ReportToDB | private |
| batch_features_ | protocols::features::ReportToDB | private |
| batch_id_ | protocols::features::ReportToDB | private |
| batch_name_ | protocols::features::ReportToDB | private |
| cache_size_ | protocols::features::ReportToDB | private |
| check_features_reporter_dependencies(FeaturesReporterOP test_feature_reporter) const | protocols::features::ReportToDB | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::features::TrajectoryReportToDB | virtual |
| create() | protocols::moves::Mover | virtual |
| current_job_ | protocols::moves::Mover | private |
| current_tag_ | protocols::moves::Mover | private |
| custom_structure_input_tag_ | protocols::features::ReportToDB | private |
| custom_structure_tag_ | protocols::features::ReportToDB | private |
| cycle_counts_ | protocols::features::TrajectoryReportToDB | private |
| db_session_ | protocols::features::ReportToDB | private |
| ensure_structure_tags_are_ready() | protocols::features::ReportToDB | protected |
| features_reporter_factory_ | protocols::features::ReportToDB | private |
| features_reporters_ | protocols::features::ReportToDB | private |
| fresh_instance() const override | protocols::features::TrajectoryReportToDB | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_batch_description() const | protocols::features::ReportToDB | |
| get_batch_name() const | protocols::features::ReportToDB | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_cycle_counts() const | protocols::features::TrajectoryReportToDB | |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_last_struct_id() const | protocols::features::ReportToDB | |
| get_name() const override | protocols::features::TrajectoryReportToDB | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_relevant_residues() const | protocols::features::ReportToDB | |
| get_relevant_residues_mode() const | protocols::features::ReportToDB | |
| get_relevant_residues_task_factory() const | protocols::features::ReportToDB | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_stride() const | protocols::features::TrajectoryReportToDB | |
| get_structure_input_tag() const | protocols::features::ReportToDB | |
| get_structure_tag() const | protocols::features::ReportToDB | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| info_ | protocols::moves::Mover | private |
| initialize_database() | protocols::features::ReportToDB | |
| initialize_pose(Pose &pose) const | protocols::features::ReportToDB | |
| initialize_relevant_residues(Pose const &pose) | protocols::features::ReportToDB | |
| initialize_reporters() | protocols::features::ReportToDB | |
| initialize_trajectory_reporter() | protocols::features::TrajectoryReportToDB | private |
| initialized | protocols::features::ReportToDB | private |
| input_pose_ | protocols::moves::Mover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| last_status_ | protocols::moves::Mover | private |
| last_struct_id_ | protocols::features::ReportToDB | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::features::TrajectoryReportToDB | static |
| name() override | protocols::features::TrajectoryReportToDB | inlinevirtual |
| native_pose_ | protocols::moves::Mover | private |
| parse_batch_description_tag_item(utility::tag::TagCOP tag) | protocols::features::ReportToDB | |
| parse_batch_id_tag_item(utility::tag::TagCOP tag) | protocols::features::ReportToDB | |
| parse_batch_name_tag_item(utility::tag::TagCOP tag) | protocols::features::ReportToDB | |
| parse_cache_size_tag_item(utility::tag::TagCOP tag) | protocols::features::ReportToDB | |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::features::TrajectoryReportToDB | virtual |
| parse_protocol_id_tag_item(utility::tag::TagCOP tag) | protocols::features::ReportToDB | |
| parse_relevant_residues_mode_tag_item(utility::tag::TagCOP tag) | protocols::features::ReportToDB | |
| parse_remove_xray_virt_tag_item(utility::tag::TagCOP tag) | protocols::features::ReportToDB | |
| parse_stride_tag_item(utility::tag::TagCOP tag) | protocols::features::TrajectoryReportToDB | |
| parse_use_transactions_tag_item(utility::tag::TagCOP tag) | protocols::features::ReportToDB | |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| protocol_features_ | protocols::features::ReportToDB | private |
| protocol_id_ | protocols::features::ReportToDB | private |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const override | protocols::features::ReportToDB | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::features::TrajectoryReportToDB | static |
| register_options() const | protocols::features::ReportToDB | virtual |
| protocols::moves::Mover::register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| relevant_residues_ | protocols::features::ReportToDB | private |
| relevant_residues_mode_ | protocols::features::ReportToDB | private |
| remove_xray_virt_ | protocols::features::ReportToDB | private |
| report_features(core::pose::Pose const &pose, StructureID struct_id, utility::vector1< bool > const &relevant_residues) const | protocols::features::ReportToDB | |
| report_structure_features() const | protocols::features::ReportToDB | |
| ReportToDB() | protocols::features::ReportToDB | |
| ReportToDB(std::string const &name) | protocols::features::ReportToDB | |
| ReportToDB(utility::sql_database::sessionOP db_session, std::string const &batch_name, std::string const &batch_description, bool use_transactions=true, core::Size cache_size=2000) | protocols::features::ReportToDB | |
| ReportToDB(std::string const &name, utility::sql_database::sessionOP db_session, std::string const &batch_name, std::string const &batch_description, bool use_transactions=true, core::Size cache_size=2000) | protocols::features::ReportToDB | |
| ReportToDB(ReportToDB const &src) | protocols::features::ReportToDB | |
| reset_status() | protocols::moves::Mover | |
| set_batch_description(std::string const &batch_description) | protocols::features::ReportToDB | |
| set_batch_name(std::string const &batch_name) | protocols::features::ReportToDB | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_relevant_residues(utility::vector1< bool > const &relevant_residues) | protocols::features::ReportToDB | |
| set_relevant_residues_mode(protocols::features::RelevantResiduesMode::T setting) | protocols::features::ReportToDB | |
| set_relevant_residues_task_factory(core::pack::task::TaskFactoryOP task_factory) | protocols::features::ReportToDB | |
| set_stride(core::Size stride) | protocols::features::TrajectoryReportToDB | |
| set_structure_input_tag(std::string const &setting) | protocols::features::ReportToDB | |
| set_structure_tag(std::string const &setting) | protocols::features::ReportToDB | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| stride_ | protocols::features::TrajectoryReportToDB | private |
| Strings typedef | protocols::moves::Mover | |
| structure_features_ | protocols::features::ReportToDB | private |
| structure_input_tag_ | protocols::features::ReportToDB | private |
| structure_tag_ | protocols::features::ReportToDB | private |
| TagCOP typedef | protocols::moves::Mover | |
| task_factory_ | protocols::features::ReportToDB | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| trajectory_map_features_reporter_ | protocols::features::TrajectoryReportToDB | private |
| TrajectoryReportToDB() | protocols::features::TrajectoryReportToDB | |
| TrajectoryReportToDB(core::Size stride) | protocols::features::TrajectoryReportToDB | |
| TrajectoryReportToDB(std::string const &name) | protocols::features::TrajectoryReportToDB | |
| TrajectoryReportToDB(utility::sql_database::sessionOP db_session, std::string const &batch_name, std::string const &batch_description, bool use_transactions=true, core::Size cache_size=2000) | protocols::features::TrajectoryReportToDB | |
| TrajectoryReportToDB(TrajectoryReportToDB const &src) | protocols::features::TrajectoryReportToDB | |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| type_ | protocols::moves::Mover | private |
| use_transactions_ | protocols::features::ReportToDB | private |
| ~ReportToDB() override | protocols::features::ReportToDB | |
| ~TrajectoryReportToDB() override | protocols::features::TrajectoryReportToDB | |
