This is the complete list of members for protocols::ligand_docking::ga_ligand_dock::MCSAligner, including all inherited members.

align_pose(core::pose::Pose const &template_pose, core::pose::Pose &ligand_pose, std::map< core::Size, core::Size > const &pair_indices_map, core::Size const &template_idx, core::Size const &ligand_idx)	protocols::ligand_docking::ga_ligand_dock::MCSAligner
apply(LigandConformer &lig)	protocols::ligand_docking::ga_ligand_dock::MCSAligner
MCSAligner(core::pose::Pose const &reference_pose, core::Size reference_ligres_idx, MCSAlignerOptions &options)	protocols::ligand_docking::ga_ligand_dock::MCSAligner
options_	protocols::ligand_docking::ga_ligand_dock::MCSAligner	private
perturb_rb_	protocols::ligand_docking::ga_ligand_dock::MCSAligner	private
perturb_torsion_	protocols::ligand_docking::ga_ligand_dock::MCSAligner	private
reference_ligres_idx_	protocols::ligand_docking::ga_ligand_dock::MCSAligner	private
reference_pose_	protocols::ligand_docking::ga_ligand_dock::MCSAligner	private
set_constraints(core::pose::Pose &pose, utility::vector1< core::Size > ligids, utility::vector1< std::pair< core::Size, core::Size > > &marked_pairs, core::Real const w_prior=1.0, utility::vector1< core::Size > const &SrcPriorIDs=utility::vector1< core::Size >(), utility::vector1< core::Size > const &TgtPriorIDs=utility::vector1< core::Size >())	protocols::ligand_docking::ga_ligand_dock::MCSAligner	private
set_options(MCSAlignerOptions const &options)	protocols::ligand_docking::ga_ligand_dock::MCSAligner	inline
set_torsion_and_align(core::pose::Pose const &template_pose, core::pose::Pose &ligand_pose, std::map< core::Size, core::Size > const &pair_indices_map, core::Size const &template_idx, core::Size const &ligand_idx)	protocols::ligand_docking::ga_ligand_dock::MCSAligner
torsion_in_align() const	protocols::ligand_docking::ga_ligand_dock::MCSAligner	inline
torsion_in_align_	protocols::ligand_docking::ga_ligand_dock::MCSAligner	private