core::scoring::DenseNeighborIterator Class Reference

#include <DenseEnergyContainer.hh>

Inheritance diagram for core::scoring::DenseNeighborIterator:

Public Member Functions
	~DenseNeighborIterator () override
	DenseNeighborIterator (Size const pos1_in, Size const pos2_in, ScoreType const st, ObjexxFCL::FArray2D< Real > *table_in, ObjexxFCL::FArray2D< bool > *computed_in)
ResidueNeighborIterator &	operator= (ResidueNeighborIterator const &src) override
ResidueNeighborIterator const &	operator++ () override
bool	operator== (ResidueNeighborIterator const &other) const override
bool	operator!= (ResidueNeighborIterator const &other) const override
Size	upper_neighbor_id () const override
Size	lower_neighbor_id () const override
Size	residue_iterated_on () const override
Size	neighbor_id () const override
void	save_energy (EnergyMap const &emap) override
void	retrieve_energy (EnergyMap &emap) const override
void	accumulate_energy (EnergyMap &emap) const override
void	mark_energy_computed () override
void	mark_energy_uncomputed () override
bool	energy_computed () const override
Public Member Functions inherited from core::scoring::ResidueNeighborIterator
	~ResidueNeighborIterator () override

Private Member Functions
DenseNeighborIterator &	operator= (DenseNeighborIterator const &src)

Private Attributes
Size	pos1_
Size	pos2_
ScoreType	score_type_
ObjexxFCL::FArray2D< Real > *	table_
ObjexxFCL::FArray2D< bool > *	computed_

Constructor & Destructor Documentation

~DenseNeighborIterator()

core::scoring::DenseNeighborIterator::~DenseNeighborIterator ( )

overridedefault

DenseNeighborIterator()

core::scoring::DenseNeighborIterator::DenseNeighborIterator	(	Size const	pos1_in,
		Size const	pos2_in,
		ScoreType const	st,
		ObjexxFCL::FArray2D< Real > *	table_in,
		ObjexxFCL::FArray2D< bool > *	computed_in
	)

Member Function Documentation

accumulate_energy()

void core::scoring::DenseNeighborIterator::accumulate_energy ( EnergyMap &  emap ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References pos1_, pos2_, and score_type_.

energy_computed()

bool core::scoring::DenseNeighborIterator::energy_computed ( ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References computed_, pos1_, and pos2_.

lower_neighbor_id()

Size core::scoring::DenseNeighborIterator::lower_neighbor_id ( ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References protocols::mean_field::min(), pos1_, and pos2_.

mark_energy_computed()

void core::scoring::DenseNeighborIterator::mark_energy_computed ( )

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References pos1_, and pos2_.

mark_energy_uncomputed()

void core::scoring::DenseNeighborIterator::mark_energy_uncomputed ( )

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References pos1_, and pos2_.

neighbor_id()

Size core::scoring::DenseNeighborIterator::neighbor_id ( ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References pos2_.

Referenced by operator==().

operator!=()

bool core::scoring::DenseNeighborIterator::operator!= ( ResidueNeighborIterator const &  other ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

operator++()

ResidueNeighborIterator const & core::scoring::DenseNeighborIterator::operator++ ( )

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References pos1_, and pos2_.

operator=() [1/2]

DenseNeighborIterator& core::scoring::DenseNeighborIterator::operator= ( DenseNeighborIterator const &  src )

private

operator=() [2/2]

ResidueNeighborIterator & core::scoring::DenseNeighborIterator::operator= ( ResidueNeighborIterator const &  src )

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References computed_, pos1_, pos2_, and table_.

operator==()

bool core::scoring::DenseNeighborIterator::operator== ( ResidueNeighborIterator const &  other ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References core::scoring::ResidueNeighborIterator::neighbor_id(), neighbor_id(), core::scoring::ResidueNeighborIterator::residue_iterated_on(), and residue_iterated_on().

residue_iterated_on()

Size core::scoring::DenseNeighborIterator::residue_iterated_on ( ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References pos1_.

Referenced by operator==().

retrieve_energy()

void core::scoring::DenseNeighborIterator::retrieve_energy ( EnergyMap &  emap ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References pos1_, pos2_, and score_type_.

save_energy()

void core::scoring::DenseNeighborIterator::save_energy ( EnergyMap const &  emap )

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References protocols::buns::energy, pos1_, pos2_, and score_type_.

upper_neighbor_id()

Size core::scoring::DenseNeighborIterator::upper_neighbor_id ( ) const

overridevirtual

Implements core::scoring::ResidueNeighborIterator.

References protocols::mean_field::max(), pos1_, and pos2_.

Member Data Documentation

computed_

ObjexxFCL::FArray2D< bool >* core::scoring::DenseNeighborIterator::computed_

private

Referenced by energy_computed(), and operator=().

pos1_

Size core::scoring::DenseNeighborIterator::pos1_

private

Referenced by accumulate_energy(), energy_computed(), lower_neighbor_id(), mark_energy_computed(), mark_energy_uncomputed(), operator++(), operator=(), residue_iterated_on(), retrieve_energy(), save_energy(), and upper_neighbor_id().

pos2_

Size core::scoring::DenseNeighborIterator::pos2_

private

Referenced by accumulate_energy(), energy_computed(), lower_neighbor_id(), mark_energy_computed(), mark_energy_uncomputed(), neighbor_id(), operator++(), operator=(), retrieve_energy(), save_energy(), and upper_neighbor_id().

score_type_

ScoreType core::scoring::DenseNeighborIterator::score_type_

private

Referenced by accumulate_energy(), retrieve_energy(), and save_energy().

table_

ObjexxFCL::FArray2D< Real >* core::scoring::DenseNeighborIterator::table_

private

Referenced by operator=().

---

The documentation for this class was generated from the following files:

• src/core/scoring/DenseEnergyContainer.hh
• src/core/scoring/DenseEnergyContainer.cc