core::chemical::rotamers Namespace Reference

Classes
class	BasicRotamerLibrarySpecification
class	BasicRotamerLibrarySpecificationCreator
class	CenrotRotamerLibrarySpecification
class	CenrotRotamerLibrarySpecificationCreator
class	DunbrackRotamerLibrarySpecification
class	DunbrackRotamerLibrarySpecificationCreator
class	NCAARotamerLibrarySpecification
class	NCAARotamerLibrarySpecificationCreator
class	PDBRotamerLibrarySpecification
class	PDBRotamerLibrarySpecificationCreator
class	RotamerLibrarySpecification
class	RotamerLibrarySpecificationCreator
class	RotamerLibrarySpecificationFactory
class	RotamerLibrarySpecificationRegistrator
	This templated class will register an instance of an RotamerLibrarySpecificationCreator (class T) with the RotamerLibrarySpecificationFactory. It will ensure that no RotamerLibrarySpecification creator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
class	StoredRotamerLibrarySpecification
	A class which stores atom coordinates for a rotamer library. Internally, this is stored as a list of name:coordinate maps. More...
class	StoredRotamerLibrarySpecificationCreator

Typedefs
typedef utility::pointer::shared_ptr< BasicRotamerLibrarySpecification >	BasicRotamerLibrarySpecificationOP
typedef utility::pointer::shared_ptr< BasicRotamerLibrarySpecification const >	BasicRotamerLibrarySpecificationCOP
typedef utility::pointer::shared_ptr< CenrotRotamerLibrarySpecification >	CenrotRotamerLibrarySpecificationOP
typedef utility::pointer::shared_ptr< CenrotRotamerLibrarySpecification const >	CenrotRotamerLibrarySpecificationCOP
typedef utility::pointer::shared_ptr< DunbrackRotamerLibrarySpecification >	DunbrackRotamerLibrarySpecificationOP
typedef utility::pointer::shared_ptr< DunbrackRotamerLibrarySpecification const >	DunbrackRotamerLibrarySpecificationCOP
typedef utility::pointer::shared_ptr< NCAARotamerLibrarySpecification >	NCAARotamerLibrarySpecificationOP
typedef utility::pointer::shared_ptr< NCAARotamerLibrarySpecification const >	NCAARotamerLibrarySpecificationCOP
typedef utility::pointer::shared_ptr< PDBRotamerLibrarySpecification >	PDBRotamerLibrarySpecificationOP
typedef utility::pointer::shared_ptr< PDBRotamerLibrarySpecification const >	PDBRotamerLibrarySpecificationCOP
typedef utility::pointer::shared_ptr< RotamerLibrarySpecification >	RotamerLibrarySpecificationOP
typedef utility::pointer::shared_ptr< RotamerLibrarySpecification const >	RotamerLibrarySpecificationCOP
typedef utility::pointer::shared_ptr< RotamerLibrarySpecificationCreator >	RotamerLibrarySpecificationCreatorOP
typedef utility::pointer::shared_ptr< RotamerLibrarySpecificationCreator const >	RotamerLibrarySpecificationCreatorCOP
typedef utility::pointer::shared_ptr< StoredRotamerLibrarySpecification >	StoredRotamerLibrarySpecificationOP
typedef utility::pointer::shared_ptr< StoredRotamerLibrarySpecification const >	StoredRotamerLibrarySpecificationCOP

Functions
static basic::Tracer	TR ("core.chemical.rotamers.NCAARotamerLibrarySpecification")
RotamerLibrarySpecificationOP	deep_copy (RotamerLibrarySpecification const &source)
static basic::Tracer	TR ("core.chemical.rotamers.RotamerLibrarySpecificationFactory")
static basic::Tracer	TR ("core.chemical.rotamers.StoredRotamerLibrarySpecification")

Typedef Documentation

BasicRotamerLibrarySpecificationCOP

typedef utility::pointer::shared_ptr< BasicRotamerLibrarySpecification const > core::chemical::rotamers::BasicRotamerLibrarySpecificationCOP

BasicRotamerLibrarySpecificationOP

typedef utility::pointer::shared_ptr< BasicRotamerLibrarySpecification > core::chemical::rotamers::BasicRotamerLibrarySpecificationOP

CenrotRotamerLibrarySpecificationCOP

typedef utility::pointer::shared_ptr< CenrotRotamerLibrarySpecification const > core::chemical::rotamers::CenrotRotamerLibrarySpecificationCOP

CenrotRotamerLibrarySpecificationOP

typedef utility::pointer::shared_ptr< CenrotRotamerLibrarySpecification > core::chemical::rotamers::CenrotRotamerLibrarySpecificationOP

DunbrackRotamerLibrarySpecificationCOP

typedef utility::pointer::shared_ptr< DunbrackRotamerLibrarySpecification const > core::chemical::rotamers::DunbrackRotamerLibrarySpecificationCOP

DunbrackRotamerLibrarySpecificationOP

typedef utility::pointer::shared_ptr< DunbrackRotamerLibrarySpecification > core::chemical::rotamers::DunbrackRotamerLibrarySpecificationOP

NCAARotamerLibrarySpecificationCOP

typedef utility::pointer::shared_ptr< NCAARotamerLibrarySpecification const > core::chemical::rotamers::NCAARotamerLibrarySpecificationCOP

NCAARotamerLibrarySpecificationOP

typedef utility::pointer::shared_ptr< NCAARotamerLibrarySpecification > core::chemical::rotamers::NCAARotamerLibrarySpecificationOP

PDBRotamerLibrarySpecificationCOP

typedef utility::pointer::shared_ptr< PDBRotamerLibrarySpecification const > core::chemical::rotamers::PDBRotamerLibrarySpecificationCOP

PDBRotamerLibrarySpecificationOP

typedef utility::pointer::shared_ptr< PDBRotamerLibrarySpecification > core::chemical::rotamers::PDBRotamerLibrarySpecificationOP

RotamerLibrarySpecificationCOP

typedef utility::pointer::shared_ptr< RotamerLibrarySpecification const > core::chemical::rotamers::RotamerLibrarySpecificationCOP

RotamerLibrarySpecificationCreatorCOP

typedef utility::pointer::shared_ptr< RotamerLibrarySpecificationCreator const > core::chemical::rotamers::RotamerLibrarySpecificationCreatorCOP

RotamerLibrarySpecificationCreatorOP

typedef utility::pointer::shared_ptr< RotamerLibrarySpecificationCreator > core::chemical::rotamers::RotamerLibrarySpecificationCreatorOP

RotamerLibrarySpecificationOP

typedef utility::pointer::shared_ptr< RotamerLibrarySpecification > core::chemical::rotamers::RotamerLibrarySpecificationOP

StoredRotamerLibrarySpecificationCOP

typedef utility::pointer::shared_ptr< StoredRotamerLibrarySpecification const > core::chemical::rotamers::StoredRotamerLibrarySpecificationCOP

StoredRotamerLibrarySpecificationOP

typedef utility::pointer::shared_ptr< StoredRotamerLibrarySpecification > core::chemical::rotamers::StoredRotamerLibrarySpecificationOP

Function Documentation

deep_copy()

RotamerLibrarySpecificationOP core::chemical::rotamers::deep_copy

(

RotamerLibrarySpecification const &

source

)

References core::chemical::rotamers::RotamerLibrarySpecification::clone().

TR() [1/3]

static basic::Tracer core::chemical::rotamers::TR ( "core.chemical.rotamers.NCAARotamerLibrarySpecification"  )

static

Referenced by core::chemical::rotamers::StoredRotamerLibrarySpecification::describe(), core::chemical::rotamers::RotamerLibrarySpecificationFactory::get_creator(), and core::chemical::rotamers::NCAARotamerLibrarySpecification::NCAARotamerLibrarySpecification().

TR() [2/3]

static basic::Tracer core::chemical::rotamers::TR ( "core.chemical.rotamers.RotamerLibrarySpecificationFactory"  )

static

TR() [3/3]

static basic::Tracer core::chemical::rotamers::TR ( "core.chemical.rotamers.StoredRotamerLibrarySpecification"  )

static