core::import_pose::pose_stream::MetaPoseInputStream Class Reference

#include <MetaPoseInputStream.hh>

Inheritance diagram for core::import_pose::pose_stream::MetaPoseInputStream:

Public Member Functions
	MetaPoseInputStream ()
	~MetaPoseInputStream () override
void	add_pose_input_stream (PoseInputStreamOP input)
utility::vector1< PoseInputStreamOP >	get_input_streams ()
bool	has_another_pose () override
void	reset () override
void	fill_pose (core::pose::Pose &pose, core::chemical::ResidueTypeSet const &residue_set, bool const metapatches=true) override
void	fill_pose (core::pose::Pose &, bool const metapatches=true) override
std::string	get_last_pose_descriptor_string () const override
	Get a string describing the last pose and where it came from. More...
Public Member Functions inherited from core::import_pose::pose_stream::PoseInputStream
	PoseInputStream ()
	~PoseInputStream () override
virtual utility::vector1< core::pose::PoseOP >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)
void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Private Attributes
core::Size	current_index_
utility::vector1< PoseInputStreamOP >	input_streams_
utility::vector1< PoseInputStreamOP >::iterator	current_input_stream_

Constructor & Destructor Documentation

MetaPoseInputStream()

core::import_pose::pose_stream::MetaPoseInputStream::MetaPoseInputStream ( )

inline

~MetaPoseInputStream()

core::import_pose::pose_stream::MetaPoseInputStream::~MetaPoseInputStream ( )

inlineoverride

Member Function Documentation

add_pose_input_stream()

void core::import_pose::pose_stream::MetaPoseInputStream::add_pose_input_stream

(

PoseInputStreamOP

input

)

References input_streams_.

Referenced by protocols::boinc::boincOutputFilter(), and core::import_pose::pose_stream::streams_from_cmd_line().

fill_pose() [1/2]

void core::import_pose::pose_stream::MetaPoseInputStream::fill_pose ( core::pose::Pose &  pose, bool const  metapatches = true  )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_index_, has_another_pose(), and input_streams_.

fill_pose() [2/2]

void core::import_pose::pose_stream::MetaPoseInputStream::fill_pose ( core::pose::Pose &  pose, core::chemical::ResidueTypeSet const &  residue_set, bool const  metapatches = true  )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_index_, has_another_pose(), and input_streams_.

Referenced by protocols::boinc::boincOutputFilter(), protocols::loophash::LoopHashLibrary::create_db(), protocols::energy_based_clustering::EnergyBasedClusteringProtocol::do_initial_import_and_scoring(), protocols::ligand_evolution::EvolutionOptions::get_pose_from_stream(), protocols::loophash::MPI_LoopHashRefine::load_structures_from_cmdline_into_library(), protocols::mpi_refinement::MPI_Refinement::load_structures_from_cmdline_into_library(), protocols::jobdist::not_universal_main(), protocols::jd2::PoseInputStreamJobInputter::pose_from_job(), IdentifyLigandMotifs::process_file_list(), and protocols::wum::SilentStructStore::read_from_cmd_line().

get_input_streams()

utility::vector1< PoseInputStreamOP > core::import_pose::pose_stream::MetaPoseInputStream::get_input_streams

(

)

References input_streams_.

get_last_pose_descriptor_string()

std::string core::import_pose::pose_stream::MetaPoseInputStream::get_last_pose_descriptor_string ( ) const

overridevirtual

Get a string describing the last pose and where it came from.

Typically, filename + number from file + input tag, but depends on the particular PoseInputStream subclass.

Author

Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org).

Implements core::import_pose::pose_stream::PoseInputStream.

References current_index_, and input_streams_.

Referenced by protocols::energy_based_clustering::EnergyBasedClusteringProtocol::do_initial_import_and_scoring(), protocols::ligand_evolution::EvolutionOptions::get_pose_from_stream(), and IdentifyLigandMotifs::process_file_list().

has_another_pose()

bool core::import_pose::pose_stream::MetaPoseInputStream::has_another_pose ( )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_index_, and input_streams_.

Referenced by protocols::boinc::boincOutputFilter(), protocols::loophash::LoopHashLibrary::create_db(), protocols::energy_based_clustering::EnergyBasedClusteringProtocol::do_initial_import_and_scoring(), fill_pose(), protocols::ligand_evolution::EvolutionOptions::get_pose_from_stream(), protocols::loophash::MPI_LoopHashRefine::load_structures_from_cmdline_into_library(), protocols::mpi_refinement::MPI_Refinement::load_structures_from_cmdline_into_library(), protocols::jobdist::not_universal_main(), protocols::ligand_evolution::EvolutionOptions::parse_cmdline(), protocols::jd2::PoseInputStreamJobInputter::pose_from_job(), IdentifyLigandMotifs::process_file_list(), and protocols::wum::SilentStructStore::read_from_cmd_line().

reset()

void core::import_pose::pose_stream::MetaPoseInputStream::reset ( )

overridevirtual

Implements core::import_pose::pose_stream::PoseInputStream.

References current_index_, and input_streams_.

Member Data Documentation

current_index_

core::Size core::import_pose::pose_stream::MetaPoseInputStream::current_index_

private

Referenced by fill_pose(), get_last_pose_descriptor_string(), has_another_pose(), and reset().

current_input_stream_

utility::vector1< PoseInputStreamOP >::iterator core::import_pose::pose_stream::MetaPoseInputStream::current_input_stream_

private

input_streams_

utility::vector1< PoseInputStreamOP > core::import_pose::pose_stream::MetaPoseInputStream::input_streams_

private

Referenced by add_pose_input_stream(), fill_pose(), get_input_streams(), get_last_pose_descriptor_string(), has_another_pose(), and reset().

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The documentation for this class was generated from the following files:

• src/core/import_pose/pose_stream/MetaPoseInputStream.hh
• src/core/import_pose/pose_stream/MetaPoseInputStream.cc