protocols::jd3::full_model_inputters Namespace Reference

Classes
class	FullModelInputSource
	The FullModelInputSource is a small class for holding data about the starting Pose for a Job and where it comes from (i.e. which of the FullModelInputters claims responsibility for creating a Pose for this instance). The "input_tag" is a string description of the input source and will be used as the "job_tag" to control output – the input tag should not include the file extension. It is perfectly reasonable for complex FullModelInputters to subclass from FullModelInputSource to tuck more complex data in the FullModelInputSource, though, the string-string map ought to provide considerable flexibility in storing data without deriving new subclasses. More...
class	FullModelInputter
	The FullModelInputter is responsible for reading from the command line a set of structures that are each to be run through a protocol, where each input struture will be the starting point for some number of jobs (where that number is at the JobQueen's discretion). The FullModelInputter is responsible for two things: More...
class	FullModelInputterCreator
class	FullModelInputterRegistrator
	This templated class will register an instance of an FullModelInputterCreator (class T) with the FullModelInputterFactory. It will ensure that no FullModelInputterCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
class	FullModelInputterFactory
class	PDBFullModelInputter
	This is the simplest implementation of FullModelInputter, which reads from -s/-l and PDB files. More...
class	PDBFullModelInputterCreator
class	SilentFileFullModelInputter
class	SilentFileFullModelInputterCreator

Typedefs
typedef utility::pointer::shared_ptr< FullModelInputSource >	FullModelInputSourceOP
typedef utility::pointer::shared_ptr< FullModelInputSource const >	FullModelInputSourceCOP
typedef utility::vector1< FullModelInputSourceOP >	FullModelInputSources
typedef utility::pointer::shared_ptr< FullModelInputter >	FullModelInputterOP
typedef utility::pointer::shared_ptr< FullModelInputter const >	FullModelInputterCOP
typedef utility::pointer::shared_ptr< FullModelInputterCreator >	FullModelInputterCreatorOP
typedef utility::pointer::shared_ptr< FullModelInputterCreator const >	FullModelInputterCreatorCOP
typedef utility::pointer::shared_ptr< PDBFullModelInputter >	PDBFullModelInputterOP
typedef utility::pointer::shared_ptr< PDBFullModelInputter const >	PDBFullModelInputterCOP
typedef utility::pointer::shared_ptr< SilentFileFullModelInputter >	SilentFileFullModelInputterOP
typedef utility::pointer::shared_ptr< SilentFileFullModelInputter const >	SilentFileFullModelInputterCOP

Functions
void	full_model_inputter_xsd_type_definition_w_attributes (utility::tag::XMLSchemaDefinition &xsd, std::string const &inputter_type, std::string const &description, utility::tag::AttributeList const &attributes)
	Define the XML schema definition for a FullModelInputter that contains no subtags but may contain any number of attributes (aka options). More...
static basic::Tracer	TR ("protocols.jd3.full_model_inputters.FullModelInputterFactory")

Typedef Documentation

FullModelInputSourceCOP

typedef utility::pointer::shared_ptr< FullModelInputSource const > protocols::jd3::full_model_inputters::FullModelInputSourceCOP

FullModelInputSourceOP

typedef utility::pointer::shared_ptr< FullModelInputSource > protocols::jd3::full_model_inputters::FullModelInputSourceOP

FullModelInputSources

typedef utility::vector1< FullModelInputSourceOP > protocols::jd3::full_model_inputters::FullModelInputSources

FullModelInputterCOP

typedef utility::pointer::shared_ptr< FullModelInputter const > protocols::jd3::full_model_inputters::FullModelInputterCOP

FullModelInputterCreatorCOP

typedef utility::pointer::shared_ptr< FullModelInputterCreator const > protocols::jd3::full_model_inputters::FullModelInputterCreatorCOP

FullModelInputterCreatorOP

typedef utility::pointer::shared_ptr< FullModelInputterCreator > protocols::jd3::full_model_inputters::FullModelInputterCreatorOP

FullModelInputterOP

typedef utility::pointer::shared_ptr< FullModelInputter > protocols::jd3::full_model_inputters::FullModelInputterOP

PDBFullModelInputterCOP

typedef utility::pointer::shared_ptr< PDBFullModelInputter const > protocols::jd3::full_model_inputters::PDBFullModelInputterCOP

PDBFullModelInputterOP

typedef utility::pointer::shared_ptr< PDBFullModelInputter > protocols::jd3::full_model_inputters::PDBFullModelInputterOP

SilentFileFullModelInputterCOP

typedef utility::pointer::shared_ptr< SilentFileFullModelInputter const> protocols::jd3::full_model_inputters::SilentFileFullModelInputterCOP

SilentFileFullModelInputterOP

typedef utility::pointer::shared_ptr< SilentFileFullModelInputter > protocols::jd3::full_model_inputters::SilentFileFullModelInputterOP

Function Documentation

full_model_inputter_xsd_type_definition_w_attributes()

void protocols::jd3::full_model_inputters::full_model_inputter_xsd_type_definition_w_attributes	(	utility::tag::XMLSchemaDefinition &	xsd,
		std::string const &	inputter_type,
		std::string const &	description,
		utility::tag::AttributeList const &	attributes
	)

Define the XML schema definition for a FullModelInputter that contains no subtags but may contain any number of attributes (aka options).

References protocols::jd3::full_model_inputters::FullModelInputterFactory::complex_type_name_for_full_model_inputter().

Referenced by protocols::jd3::full_model_inputters::PDBFullModelInputter::provide_xml_schema(), and protocols::jd3::full_model_inputters::SilentFileFullModelInputter::provide_xml_schema().

TR()

static basic::Tracer protocols::jd3::full_model_inputters::TR ( "protocols.jd3.full_model_inputters.FullModelInputterFactory"  )

static

Referenced by protocols::jd3::full_model_inputters::FullModelInputterFactory::new_full_model_inputter().