core::scoring::DenseEnergyContainer Class Reference

#include <DenseEnergyContainer.hh>

Inheritance diagram for core::scoring::DenseEnergyContainer:

Public Member Functions
	~DenseEnergyContainer () override
LREnergyContainerOP	clone () const override
	DenseEnergyContainer (Size const size_in, ScoreType const score_type_in)
bool	empty () const override
void	set_num_nodes (Size size_in) override
bool	any_neighbors_for_residue (int) const override
bool	any_upper_neighbors_for_residue (int resid) const override
Size	size () const
ResidueNeighborConstIteratorOP	const_neighbor_iterator_begin (int resid) const override
ResidueNeighborConstIteratorOP	const_neighbor_iterator_end (int resid) const override
ResidueNeighborConstIteratorOP	const_upper_neighbor_iterator_begin (int resid) const override
ResidueNeighborConstIteratorOP	const_upper_neighbor_iterator_end (int resid) const override
ResidueNeighborIteratorOP	neighbor_iterator_begin (int resid) override
ResidueNeighborIteratorOP	neighbor_iterator_end (int resid) override
ResidueNeighborIteratorOP	upper_neighbor_iterator_begin (int resid) override
ResidueNeighborIteratorOP	upper_neighbor_iterator_end (int resid) override
Public Member Functions inherited from core::scoring::LREnergyContainer
	~LREnergyContainer () override

Private Attributes
Size	size_
ScoreType	score_type_
ObjexxFCL::FArray2D< Real >	table_
ObjexxFCL::FArray2D< bool >	computed_

Constructor & Destructor Documentation

~DenseEnergyContainer()

core::scoring::DenseEnergyContainer::~DenseEnergyContainer ( )

overridedefault

DenseEnergyContainer()

core::scoring::DenseEnergyContainer::DenseEnergyContainer	(	Size const	size_in,
		ScoreType const	score_type_in
	)

Member Function Documentation

any_neighbors_for_residue()

bool core::scoring::DenseEnergyContainer::any_neighbors_for_residue ( int  ) const

overridevirtual

Implements core::scoring::LREnergyContainer.

any_upper_neighbors_for_residue()

bool core::scoring::DenseEnergyContainer::any_upper_neighbors_for_residue ( int  resid ) const

overridevirtual

Implements core::scoring::LREnergyContainer.

References size_.

clone()

LREnergyContainerOP core::scoring::DenseEnergyContainer::clone ( ) const

overridevirtual

Implements core::scoring::LREnergyContainer.

const_neighbor_iterator_begin()

ResidueNeighborConstIteratorOP core::scoring::DenseEnergyContainer::const_neighbor_iterator_begin ( int  resid ) const

overridevirtual

Implements core::scoring::LREnergyContainer.

References computed_, score_type_, and table_.

const_neighbor_iterator_end()

ResidueNeighborConstIteratorOP core::scoring::DenseEnergyContainer::const_neighbor_iterator_end ( int  resid ) const

overridevirtual

Implements core::scoring::LREnergyContainer.

References computed_, score_type_, size_, and table_.

Referenced by const_upper_neighbor_iterator_end().

const_upper_neighbor_iterator_begin()

ResidueNeighborConstIteratorOP core::scoring::DenseEnergyContainer::const_upper_neighbor_iterator_begin ( int  resid ) const

overridevirtual

Implements core::scoring::LREnergyContainer.

References computed_, score_type_, and table_.

const_upper_neighbor_iterator_end()

ResidueNeighborConstIteratorOP core::scoring::DenseEnergyContainer::const_upper_neighbor_iterator_end ( int  resid ) const

overridevirtual

Implements core::scoring::LREnergyContainer.

References const_neighbor_iterator_end().

empty()

bool core::scoring::DenseEnergyContainer::empty ( ) const

overridevirtual

Implements core::scoring::LREnergyContainer.

References size_.

neighbor_iterator_begin()

ResidueNeighborIteratorOP core::scoring::DenseEnergyContainer::neighbor_iterator_begin ( int  resid )

overridevirtual

Implements core::scoring::LREnergyContainer.

References computed_, score_type_, and table_.

neighbor_iterator_end()

ResidueNeighborIteratorOP core::scoring::DenseEnergyContainer::neighbor_iterator_end ( int  resid )

overridevirtual

Implements core::scoring::LREnergyContainer.

References computed_, score_type_, size_, and table_.

Referenced by upper_neighbor_iterator_end().

set_num_nodes()

void core::scoring::DenseEnergyContainer::set_num_nodes ( Size  size_in )

overridevirtual

Reimplemented from core::scoring::LREnergyContainer.

References computed_, size_, and table_.

size()

Size core::scoring::DenseEnergyContainer::size

(

)

const

References size_.

upper_neighbor_iterator_begin()

ResidueNeighborIteratorOP core::scoring::DenseEnergyContainer::upper_neighbor_iterator_begin ( int  resid )

overridevirtual

Implements core::scoring::LREnergyContainer.

References computed_, score_type_, and table_.

upper_neighbor_iterator_end()

ResidueNeighborIteratorOP core::scoring::DenseEnergyContainer::upper_neighbor_iterator_end ( int  resid )

overridevirtual

Implements core::scoring::LREnergyContainer.

References neighbor_iterator_end().

Member Data Documentation

computed_

ObjexxFCL::FArray2D< bool > core::scoring::DenseEnergyContainer::computed_

private

Referenced by const_neighbor_iterator_begin(), const_neighbor_iterator_end(), const_upper_neighbor_iterator_begin(), neighbor_iterator_begin(), neighbor_iterator_end(), set_num_nodes(), and upper_neighbor_iterator_begin().

score_type_

ScoreType core::scoring::DenseEnergyContainer::score_type_

private

Referenced by const_neighbor_iterator_begin(), const_neighbor_iterator_end(), const_upper_neighbor_iterator_begin(), neighbor_iterator_begin(), neighbor_iterator_end(), and upper_neighbor_iterator_begin().

size_

Size core::scoring::DenseEnergyContainer::size_

private

Referenced by any_upper_neighbors_for_residue(), const_neighbor_iterator_end(), empty(), neighbor_iterator_end(), set_num_nodes(), and size().

table_

ObjexxFCL::FArray2D< Real > core::scoring::DenseEnergyContainer::table_

private

Referenced by const_neighbor_iterator_begin(), const_neighbor_iterator_end(), const_upper_neighbor_iterator_begin(), neighbor_iterator_begin(), neighbor_iterator_end(), set_num_nodes(), and upper_neighbor_iterator_begin().

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The documentation for this class was generated from the following files:

• src/core/scoring/DenseEnergyContainer.hh
• src/core/scoring/DenseEnergyContainer.cc