protocols::parser::ScoreFunctionLoader Class Reference

A class for loading arbitrary data into the XML parser's basic::datacache::DataMap. More...

#include <ScoreFunctionLoader.hh>

Inheritance diagram for protocols::parser::ScoreFunctionLoader:

Public Member Functions
	ScoreFunctionLoader ()
	~ScoreFunctionLoader () override
void	load_data (utility::tag::TagCOP tag, basic::datacache::DataMap &data) const override
	The ScoreFunctionLoader will create named ScoreFunctions and load them into the basic::datacache::DataMap. More...
Public Member Functions inherited from protocols::parser::DataLoader
	DataLoader ()
	~DataLoader () override

Static Public Member Functions
static core::scoring::ScoreFunctionOP	create_scorefxn_from_tag (utility::tag::TagCOP tag)
	Load THE single ScoreFunction from a tag. More...
static std::string	loader_name ()
static std::string	score_function_loader_ct_namer (std::string const &element_name)
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Detailed Description

A class for loading arbitrary data into the XML parser's basic::datacache::DataMap.

Constructor & Destructor Documentation

ScoreFunctionLoader()

protocols::parser::ScoreFunctionLoader::ScoreFunctionLoader ( )

default

~ScoreFunctionLoader()

protocols::parser::ScoreFunctionLoader::~ScoreFunctionLoader ( )

overridedefault

Member Function Documentation

create_scorefxn_from_tag()

core::scoring::ScoreFunctionOP protocols::parser::ScoreFunctionLoader::create_scorefxn_from_tag ( utility::tag::TagCOP  tag )

static

Load THE single ScoreFunction from a tag.

Load a single ScoreFunction from a tag.

References core::chemical::aa_from_oneletter_code(), core::scoring::methods::EnergyMethodOptions::append_aa_composition_setup_files(), core::scoring::methods::EnergyMethodOptions::append_mhc_epitope_setup_files(), core::scoring::methods::EnergyMethodOptions::append_netcharge_setup_files(), core::scoring::methods::EnergyMethodOptions::approximate_buried_unsat_penalty_assume_const_backbone(), core::scoring::methods::EnergyMethodOptions::approximate_buried_unsat_penalty_burial_atomic_depth(), core::scoring::methods::EnergyMethodOptions::approximate_buried_unsat_penalty_burial_probe_radius(), core::scoring::methods::EnergyMethodOptions::approximate_buried_unsat_penalty_burial_resolution(), core::scoring::methods::EnergyMethodOptions::approximate_buried_unsat_penalty_hbond_bonus_cross_chain(), core::scoring::methods::EnergyMethodOptions::approximate_buried_unsat_penalty_hbond_bonus_ser_to_helix_bb(), core::scoring::methods::EnergyMethodOptions::approximate_buried_unsat_penalty_hbond_energy_threshold(), core::scoring::methods::EnergyMethodOptions::approximate_buried_unsat_penalty_lys_ok_with_1(), core::scoring::methods::EnergyMethodOptions::approximate_buried_unsat_penalty_natural_corrections1(), core::scoring::methods::EnergyMethodOptions::approximate_buried_unsat_penalty_oversat_penalty(), core::scoring::methods::EnergyMethodOptions::arg_cation_pi_his_can_be_pi(), core::scoring::backbone_stub_constraint, core::scoring::methods::EnergyMethodOptions::buried_unsatisfied_penalty_burial_threshold(), core::scoring::methods::EnergyMethodOptions::buried_unsatisfied_penalty_cone_angle_exponent(), core::scoring::methods::EnergyMethodOptions::buried_unsatisfied_penalty_cone_angle_shift_factor(), core::scoring::methods::EnergyMethodOptions::buried_unsatisfied_penalty_cone_dist_exponent(), core::scoring::methods::EnergyMethodOptions::buried_unsatisfied_penalty_cone_dist_midpoint(), core::scoring::methods::EnergyMethodOptions::buried_unsatisfied_penalty_hbond_energy_threshold(), core::scoring::check_score_function_sanity(), core::scoring::ScoreFunctionFactory::create_score_function(), core::scoring::methods::EnergyMethodOptions::dump_trajectory_gz(), core::scoring::methods::EnergyMethodOptions::dump_trajectory_prefix(), core::scoring::methods::EnergyMethodOptions::dump_trajectory_stride(), core::scoring::methods::EnergyMethodOptions::elec_die(), core::scoring::methods::EnergyMethodOptions::elec_max_dis(), core::scoring::methods::EnergyMethodOptions::elec_min_dis(), core::scoring::methods::EnergyMethodOptions::elec_no_dis_dep_die(), core::scoring::methods::EnergyMethodOptions::etable_options(), core::scoring::methods::EnergyMethodOptions::etable_type(), core::scoring::methods::EnergyMethodOptions::exclude_DNA_DNA(), core::scoring::methods::EnergyMethodOptions::exclude_protein_protein_fa_elec(), core::scoring::FA_STANDARD_SOFT, core::scoring::methods::EnergyMethodOptions::get_density_sc_scale_byres(), core::scoring::methods::EnergyMethodOptions::hbnet_bonus_function_ramping(), core::scoring::methods::EnergyMethodOptions::hbnet_max_network_size(), core::scoring::methods::EnergyMethodOptions::hbond_options(), core::scoring::methods::EnergyMethodOptions::nmer_ref_seq_length(), core::scoring::methods::EnergyMethodOptions::nmer_svm(), core::scoring::methods::EnergyMethodOptions::nmer_svm_aa_matrix(), core::scoring::methods::EnergyMethodOptions::nmer_svm_avg_rank_as_energy(), core::scoring::methods::EnergyMethodOptions::nmer_svm_list(), core::scoring::methods::EnergyMethodOptions::nmer_svm_pssm_feat(), core::scoring::methods::EnergyMethodOptions::nmer_svm_rank(), core::scoring::methods::EnergyMethodOptions::nmer_svm_rank_list(), core::scoring::methods::EnergyMethodOptions::nmer_svm_scorecut(), core::scoring::methods::EnergyMethodOptions::nmer_svm_term_length(), core::chemical::num_canonical_aas, core::scoring::etable::EtableOptions::parse_my_tag(), core::scoring::hbonds::HBondOptions::parse_my_tag(), core::scoring::methods::EnergyMethodOptions::pb_bound_tag(), core::scoring::PB_elec, core::scoring::methods::EnergyMethodOptions::pb_unbound_tag(), core::scoring::score_type_from_name(), core::scoring::methods::EnergyMethodOptions::set_density_sc_scale_byres(), core::scoring::methods::EnergyMethodOptions::target_clash_pdb(), protocols::parser::TR(), core::scoring::methods::EnergyMethodOptions::voids_penalty_energy_cone_distance_cutoff(), core::scoring::methods::EnergyMethodOptions::voids_penalty_energy_cone_dotproduct_cutoff(), core::scoring::methods::EnergyMethodOptions::voids_penalty_energy_containing_cones_cutoff(), core::scoring::methods::EnergyMethodOptions::voids_penalty_energy_disabled_except_during_packing(), core::scoring::methods::EnergyMethodOptions::voids_penalty_energy_voxel_grid_padding(), and core::scoring::methods::EnergyMethodOptions::voids_penalty_energy_voxel_size().

Referenced by load_data().

load_data()

void protocols::parser::ScoreFunctionLoader::load_data ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data  ) const

overridevirtual

The ScoreFunctionLoader will create named ScoreFunctions and load them into the basic::datacache::DataMap.

Implements protocols::parser::DataLoader.

References create_scorefxn_from_tag().

loader_name()

std::string protocols::parser::ScoreFunctionLoader::loader_name ( )

static

Referenced by protocols::parser::ScoreFunctionLoaderCreator::keyname(), and provide_xml_schema().

provide_xml_schema()

void protocols::parser::ScoreFunctionLoader::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References core::scoring::etable::EtableOptions::append_schema_attributes(), core::scoring::hbonds::HBondOptions::append_schema_attributes(), loader_name(), and score_function_loader_ct_namer().

Referenced by protocols::jd3::append_single_scorefxn_subelement(), and protocols::parser::ScoreFunctionLoaderCreator::provide_xml_schema().

score_function_loader_ct_namer()

std::string protocols::parser::ScoreFunctionLoader::score_function_loader_ct_namer ( std::string const &  element_name )

static

Referenced by protocols::jd3::append_single_scorefxn_subelement(), provide_xml_schema(), and protocols::parser::ScoreFunctionLoaderCreator::schema_ct_naming_function().

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The documentation for this class was generated from the following files:

• src/protocols/parser/ScoreFunctionLoader.hh
• src/protocols/parser/ScoreFunctionLoader.cc