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Classes | Typedefs | Functions
protocols::sewing::scoring Namespace Reference

Classes

class  AssemblyScorer
 an interface for making Requirements that deal with Assemblies More...
 
class  AssemblyScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  AssemblyScorerFactory
 Create AssemblyScorers. More...
 
class  AssemblyScorerRegistrator
 This templated class will register an instance of an RequirementCreator (class T) with the RequirementFactory. It will ensure that no RequirementCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
 
class  InterModelMotifScorer
 
class  InterModelMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  IntraDesignTerminusMotifScorer
 
class  IntraDesignTerminusMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  LigandAssemblyScorer
 an interface for making Requirements that deal with Assemblies More...
 
class  LigandScorer
 
class  LigandScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  MotifScorer
 
class  MotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  PartnerMotifScorer
 
class  PartnerMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  SegmentContactOrderScorer
 
class  SegmentContactOrderScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  StartingNodeMotifScorer
 
class  StartingNodeMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  SubsetPartnerMotifScorer
 
class  SubsetPartnerMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  TerminusMotifScorer
 
class  TerminusMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 
class  TopNMotifScorer
 
class  TopNMotifScorerCreator
 The Creator class is responsible for creating a particular GlobalRequirement class. More...
 

Typedefs

typedef utility::pointer::shared_ptr< AssemblyScorer > AssemblyScorerOP
 
typedef utility::pointer::shared_ptr< AssemblyScorer const > AssemblyScorerCOP
 
typedef utility::pointer::shared_ptr< AssemblyScorerCreator > AssemblyScorerCreatorOP
 
typedef utility::pointer::shared_ptr< AssemblyScorerCreator const > AssemblyScorerCreatorCOP
 
typedef utility::pointer::shared_ptr< InterModelMotifScorer > InterModelMotifScorerOP
 
typedef utility::pointer::shared_ptr< InterModelMotifScorer const > InterModelMotifScorerCOP
 
typedef utility::pointer::shared_ptr< InterModelMotifScorerCreator > InterModelMotifScorerCreatorOP
 
typedef utility::pointer::shared_ptr< InterModelMotifScorerCreator const > InterModelMotifScorerCreatorCOP
 
typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorer > IntraDesignTerminusMotifScorerOP
 
typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorer const > IntraDesignTerminusMotifScorerCOP
 
typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorerCreator > IntraDesignTerminusMotifScorerCreatorOP
 
typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorerCreator const > IntraDesignTerminusMotifScorerCreatorCOP
 
typedef utility::pointer::shared_ptr< LigandAssemblyScorer > LigandAssemblyScorerOP
 
typedef utility::pointer::shared_ptr< LigandAssemblyScorer const > LigandAssemblyScorerCOP
 
typedef utility::pointer::shared_ptr< LigandScorer > LigandScorerOP
 
typedef utility::pointer::shared_ptr< LigandScorer const > LigandScorerCOP
 
typedef utility::pointer::shared_ptr< LigandScorerCreator > LigandScorerCreatorOP
 
typedef utility::pointer::shared_ptr< LigandScorerCreator const > LigandScorerCreatorCOP
 
typedef utility::pointer::shared_ptr< MotifScorer > MotifScorerOP
 
typedef utility::pointer::shared_ptr< MotifScorer const > MotifScorerCOP
 
typedef utility::pointer::shared_ptr< MotifScorerCreator > MotifScorerCreatorOP
 
typedef utility::pointer::shared_ptr< MotifScorerCreator const > MotifScorerCreatorCOP
 
typedef utility::pointer::shared_ptr< PartnerMotifScorer > PartnerMotifScorerOP
 
typedef utility::pointer::shared_ptr< PartnerMotifScorer const > PartnerMotifScorerCOP
 
typedef utility::pointer::shared_ptr< PartnerMotifScorerCreator > PartnerMotifScorerCreatorOP
 
typedef utility::pointer::shared_ptr< PartnerMotifScorerCreator const > PartnerMotifScorerCreatorCOP
 
typedef utility::pointer::shared_ptr< SegmentContactOrderScorer > SegmentContactOrderScorerOP
 
typedef utility::pointer::shared_ptr< SegmentContactOrderScorer const > SegmentContactOrderScorerCOP
 
typedef utility::pointer::shared_ptr< SegmentContactOrderScorerCreator > SegmentContactOrderScorerCreatorOP
 
typedef utility::pointer::shared_ptr< SegmentContactOrderScorerCreator const > SegmentContactOrderScorerCreatorCOP
 
typedef utility::pointer::shared_ptr< StartingNodeMotifScorer > StartingNodeMotifScorerOP
 
typedef utility::pointer::shared_ptr< StartingNodeMotifScorer const > StartingNodeMotifScorerCOP
 
typedef utility::pointer::shared_ptr< StartingNodeMotifScorerCreator > StartingNodeMotifScorerCreatorOP
 
typedef utility::pointer::shared_ptr< StartingNodeMotifScorerCreator const > StartingNodeMotifScorerCreatorCOP
 
typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorer > SubsetPartnerMotifScorerOP
 
typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorer const > SubsetPartnerMotifScorerCOP
 
typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorerCreator > SubsetPartnerMotifScorerCreatorOP
 
typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorerCreator const > SubsetPartnerMotifScorerCreatorCOP
 
typedef utility::pointer::shared_ptr< TerminusMotifScorer > TerminusMotifScorerOP
 
typedef utility::pointer::shared_ptr< TerminusMotifScorer const > TerminusMotifScorerCOP
 
typedef utility::pointer::shared_ptr< TerminusMotifScorerCreator > TerminusMotifScorerCreatorOP
 
typedef utility::pointer::shared_ptr< TerminusMotifScorerCreator const > TerminusMotifScorerCreatorCOP
 
typedef utility::pointer::shared_ptr< TopNMotifScorer > TopNMotifScorerOP
 
typedef utility::pointer::shared_ptr< TopNMotifScorer const > TopNMotifScorerCOP
 
typedef utility::pointer::shared_ptr< TopNMotifScorerCreator > TopNMotifScorerCreatorOP
 
typedef utility::pointer::shared_ptr< TopNMotifScorerCreator const > TopNMotifScorerCreatorCOP
 

Functions

static basic::Tracer TR ("protocols.sewing.scoring.AssemblyScorerFactory")
 
static basic::Tracer TR ("protocols.sewing.scoring.InterModelMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.IntraDesignTerminusMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.LigandScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.MotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.PartnerMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.SegmentContactOrderScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.StartingNodeMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.SubsetPartnerMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.TerminusMotifScorer")
 
static basic::Tracer TR ("protocols.sewing.scoring.TopNMotifScorer")
 

Typedef Documentation

◆ AssemblyScorerCOP

typedef utility::pointer::shared_ptr< AssemblyScorer const > protocols::sewing::scoring::AssemblyScorerCOP

◆ AssemblyScorerCreatorCOP

typedef utility::pointer::shared_ptr< AssemblyScorerCreator const > protocols::sewing::scoring::AssemblyScorerCreatorCOP

◆ AssemblyScorerCreatorOP

typedef utility::pointer::shared_ptr< AssemblyScorerCreator > protocols::sewing::scoring::AssemblyScorerCreatorOP

◆ AssemblyScorerOP

typedef utility::pointer::shared_ptr< AssemblyScorer > protocols::sewing::scoring::AssemblyScorerOP

◆ InterModelMotifScorerCOP

typedef utility::pointer::shared_ptr< InterModelMotifScorer const > protocols::sewing::scoring::InterModelMotifScorerCOP

◆ InterModelMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< InterModelMotifScorerCreator const > protocols::sewing::scoring::InterModelMotifScorerCreatorCOP

◆ InterModelMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< InterModelMotifScorerCreator > protocols::sewing::scoring::InterModelMotifScorerCreatorOP

◆ InterModelMotifScorerOP

typedef utility::pointer::shared_ptr< InterModelMotifScorer > protocols::sewing::scoring::InterModelMotifScorerOP

◆ IntraDesignTerminusMotifScorerCOP

typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorer const > protocols::sewing::scoring::IntraDesignTerminusMotifScorerCOP

◆ IntraDesignTerminusMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorerCreator const > protocols::sewing::scoring::IntraDesignTerminusMotifScorerCreatorCOP

◆ IntraDesignTerminusMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorerCreator > protocols::sewing::scoring::IntraDesignTerminusMotifScorerCreatorOP

◆ IntraDesignTerminusMotifScorerOP

typedef utility::pointer::shared_ptr< IntraDesignTerminusMotifScorer > protocols::sewing::scoring::IntraDesignTerminusMotifScorerOP

◆ LigandAssemblyScorerCOP

typedef utility::pointer::shared_ptr< LigandAssemblyScorer const > protocols::sewing::scoring::LigandAssemblyScorerCOP

◆ LigandAssemblyScorerOP

typedef utility::pointer::shared_ptr< LigandAssemblyScorer > protocols::sewing::scoring::LigandAssemblyScorerOP

◆ LigandScorerCOP

typedef utility::pointer::shared_ptr< LigandScorer const > protocols::sewing::scoring::LigandScorerCOP

◆ LigandScorerCreatorCOP

typedef utility::pointer::shared_ptr< LigandScorerCreator const > protocols::sewing::scoring::LigandScorerCreatorCOP

◆ LigandScorerCreatorOP

typedef utility::pointer::shared_ptr< LigandScorerCreator > protocols::sewing::scoring::LigandScorerCreatorOP

◆ LigandScorerOP

typedef utility::pointer::shared_ptr< LigandScorer > protocols::sewing::scoring::LigandScorerOP

◆ MotifScorerCOP

typedef utility::pointer::shared_ptr< MotifScorer const > protocols::sewing::scoring::MotifScorerCOP

◆ MotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< MotifScorerCreator const > protocols::sewing::scoring::MotifScorerCreatorCOP

◆ MotifScorerCreatorOP

typedef utility::pointer::shared_ptr< MotifScorerCreator > protocols::sewing::scoring::MotifScorerCreatorOP

◆ MotifScorerOP

typedef utility::pointer::shared_ptr< MotifScorer > protocols::sewing::scoring::MotifScorerOP

◆ PartnerMotifScorerCOP

typedef utility::pointer::shared_ptr< PartnerMotifScorer const > protocols::sewing::scoring::PartnerMotifScorerCOP

◆ PartnerMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< PartnerMotifScorerCreator const > protocols::sewing::scoring::PartnerMotifScorerCreatorCOP

◆ PartnerMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< PartnerMotifScorerCreator > protocols::sewing::scoring::PartnerMotifScorerCreatorOP

◆ PartnerMotifScorerOP

typedef utility::pointer::shared_ptr< PartnerMotifScorer > protocols::sewing::scoring::PartnerMotifScorerOP

◆ SegmentContactOrderScorerCOP

typedef utility::pointer::shared_ptr< SegmentContactOrderScorer const > protocols::sewing::scoring::SegmentContactOrderScorerCOP

◆ SegmentContactOrderScorerCreatorCOP

typedef utility::pointer::shared_ptr< SegmentContactOrderScorerCreator const > protocols::sewing::scoring::SegmentContactOrderScorerCreatorCOP

◆ SegmentContactOrderScorerCreatorOP

typedef utility::pointer::shared_ptr< SegmentContactOrderScorerCreator > protocols::sewing::scoring::SegmentContactOrderScorerCreatorOP

◆ SegmentContactOrderScorerOP

typedef utility::pointer::shared_ptr< SegmentContactOrderScorer > protocols::sewing::scoring::SegmentContactOrderScorerOP

◆ StartingNodeMotifScorerCOP

typedef utility::pointer::shared_ptr< StartingNodeMotifScorer const > protocols::sewing::scoring::StartingNodeMotifScorerCOP

◆ StartingNodeMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< StartingNodeMotifScorerCreator const > protocols::sewing::scoring::StartingNodeMotifScorerCreatorCOP

◆ StartingNodeMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< StartingNodeMotifScorerCreator > protocols::sewing::scoring::StartingNodeMotifScorerCreatorOP

◆ StartingNodeMotifScorerOP

typedef utility::pointer::shared_ptr< StartingNodeMotifScorer > protocols::sewing::scoring::StartingNodeMotifScorerOP

◆ SubsetPartnerMotifScorerCOP

typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorer const > protocols::sewing::scoring::SubsetPartnerMotifScorerCOP

◆ SubsetPartnerMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorerCreator const > protocols::sewing::scoring::SubsetPartnerMotifScorerCreatorCOP

◆ SubsetPartnerMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorerCreator > protocols::sewing::scoring::SubsetPartnerMotifScorerCreatorOP

◆ SubsetPartnerMotifScorerOP

typedef utility::pointer::shared_ptr< SubsetPartnerMotifScorer > protocols::sewing::scoring::SubsetPartnerMotifScorerOP

◆ TerminusMotifScorerCOP

typedef utility::pointer::shared_ptr< TerminusMotifScorer const > protocols::sewing::scoring::TerminusMotifScorerCOP

◆ TerminusMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< TerminusMotifScorerCreator const > protocols::sewing::scoring::TerminusMotifScorerCreatorCOP

◆ TerminusMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< TerminusMotifScorerCreator > protocols::sewing::scoring::TerminusMotifScorerCreatorOP

◆ TerminusMotifScorerOP

typedef utility::pointer::shared_ptr< TerminusMotifScorer > protocols::sewing::scoring::TerminusMotifScorerOP

◆ TopNMotifScorerCOP

typedef utility::pointer::shared_ptr< TopNMotifScorer const > protocols::sewing::scoring::TopNMotifScorerCOP

◆ TopNMotifScorerCreatorCOP

typedef utility::pointer::shared_ptr< TopNMotifScorerCreator const > protocols::sewing::scoring::TopNMotifScorerCreatorCOP

◆ TopNMotifScorerCreatorOP

typedef utility::pointer::shared_ptr< TopNMotifScorerCreator > protocols::sewing::scoring::TopNMotifScorerCreatorOP

◆ TopNMotifScorerOP

typedef utility::pointer::shared_ptr< TopNMotifScorer > protocols::sewing::scoring::TopNMotifScorerOP

Function Documentation

◆ TR() [1/11]

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.AssemblyScorerFactory"  )
static

Referenced by protocols::sewing::scoring::InterModelMotifScorer::full_motif_score(), protocols::sewing::scoring::StartingNodeMotifScorer::full_motif_score(), protocols::sewing::scoring::TopNMotifScorer::full_motif_score(), protocols::sewing::scoring::AssemblyScorerFactory::get_assembly_scorer(), protocols::sewing::scoring::InterModelMotifScorer::score(), protocols::sewing::scoring::LigandScorer::score(), protocols::sewing::scoring::MotifScorer::score(), protocols::sewing::scoring::TopNMotifScorer::score(), protocols::sewing::scoring::InterModelMotifScorer::set_options_from_tag(), protocols::sewing::scoring::IntraDesignTerminusMotifScorer::set_options_from_tag(), protocols::sewing::scoring::LigandScorer::set_options_from_tag(), protocols::sewing::scoring::MotifScorer::set_options_from_tag(), protocols::sewing::scoring::PartnerMotifScorer::set_options_from_tag(), protocols::sewing::scoring::SegmentContactOrderScorer::set_options_from_tag(), protocols::sewing::scoring::StartingNodeMotifScorer::set_options_from_tag(), protocols::sewing::scoring::SubsetPartnerMotifScorer::set_options_from_tag(), protocols::sewing::scoring::TerminusMotifScorer::set_options_from_tag(), protocols::sewing::scoring::TopNMotifScorer::set_options_from_tag(), protocols::sewing::scoring::SubsetPartnerMotifScorer::set_starts_and_ends(), protocols::sewing::scoring::IntraDesignTerminusMotifScorer::terminus_motif_score(), and protocols::sewing::scoring::TerminusMotifScorer::terminus_motif_score().

◆ TR() [2/11]

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.InterModelMotifScorer"  )
static

◆ TR() [3/11]

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.IntraDesignTerminusMotifScorer"  )
static

◆ TR() [4/11]

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.LigandScorer"  )
static

◆ TR() [5/11]

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.MotifScorer"  )
static

◆ TR() [6/11]

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.PartnerMotifScorer"  )
static

◆ TR() [7/11]

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.SegmentContactOrderScorer"  )
static

◆ TR() [8/11]

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.StartingNodeMotifScorer"  )
static

◆ TR() [9/11]

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.SubsetPartnerMotifScorer"  )
static

◆ TR() [10/11]

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.TerminusMotifScorer"  )
static

◆ TR() [11/11]

static basic::Tracer protocols::sewing::scoring::TR ( "protocols.sewing.scoring.TopNMotifScorer"  )
static
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