| aatype_for_state(int state) const | core::pack::interaction_graph::DoubleLazyNode | virtual |
| acknowledge_neighbors_partial_state_substitution(int edge_to_altered_neighbor, int other_node_new_, SparseMatrixIndex const &other_node_new_state_sparse_info) | core::pack::interaction_graph::DoubleLazyNode | |
| acknowledge_neighbors_state_substitution(int edge_to_altered_neighbor, core::PackerEnergy new_edge_energy, int other_node_new_state, SparseMatrixIndex const &other_node_new_state_sparse_info) | core::pack::interaction_graph::DoubleLazyNode | inline |
| add_edge(EdgeBase *edge_ptr) | core::pack::interaction_graph::NodeBase | |
| add_to_one_body_energies(ObjexxFCL::FArray1< core::PackerEnergy > &energy1b) override | core::pack::interaction_graph::OnTheFlyNode | virtual |
| add_to_one_body_energy(int state, core::PackerEnergy energy) override | core::pack::interaction_graph::OnTheFlyNode | virtual |
| adjacent_node_ | core::pack::interaction_graph::NodeBase | private |
| adjacent_node_ind_ | core::pack::interaction_graph::NodeBase | private |
| alt_state_sparse_mat_info_ | core::pack::interaction_graph::DoubleLazyNode | private |
| alternate_state_ | core::pack::interaction_graph::DoubleLazyNode | private |
| alternate_state_is_being_considered_ | core::pack::interaction_graph::DoubleLazyNode | private |
| alternate_state_one_body_energy_ | core::pack::interaction_graph::DoubleLazyNode | private |
| alternate_state_total_energy_ | core::pack::interaction_graph::DoubleLazyNode | private |
| alternate_state_two_body_energies_ | core::pack::interaction_graph::DoubleLazyNode | private |
| assign_state(int new_state) | core::pack::interaction_graph::DoubleLazyNode | |
| assign_zero_state() override | core::pack::interaction_graph::DoubleLazyNode | virtual |
| bb_bounding_sphere() const | core::pack::interaction_graph::OnTheFlyNode | inlineprotected |
| bb_bounding_sphere_ | core::pack::interaction_graph::OnTheFlyNode | private |
| BoundingSphere typedef | core::pack::interaction_graph::OnTheFlyNode | |
| calc_deltaEpd(int alternate_state) | core::pack::interaction_graph::DoubleLazyNode | protected |
| commit_considered_substitution() | core::pack::interaction_graph::DoubleLazyNode | |
| complete_state_assignment() | core::pack::interaction_graph::DoubleLazyNode | |
| compute_pair_energy_for_current_state(int edge_making_energy_request) | core::pack::interaction_graph::DoubleLazyNode | |
| compute_rotamer_pair_energy(int edge_making_energy_request, int state_this, int state_other) const | core::pack::interaction_graph::OnTheFlyNode | |
| considering_alternate_state() const | core::pack::interaction_graph::DoubleLazyNode | inlineprotected |
| count_dynamic_memory() const override | core::pack::interaction_graph::DoubleLazyNode | virtual |
| count_static_memory() const override | core::pack::interaction_graph::DoubleLazyNode | virtual |
| curr_state_one_body_energy_ | core::pack::interaction_graph::DoubleLazyNode | private |
| curr_state_sparse_mat_info_ | core::pack::interaction_graph::DoubleLazyNode | private |
| curr_state_total_energy_ | core::pack::interaction_graph::DoubleLazyNode | private |
| curr_state_two_body_energies_ | core::pack::interaction_graph::DoubleLazyNode | private |
| current_state_ | core::pack::interaction_graph::DoubleLazyNode | private |
| depth_first_connected_component_counting() | core::pack::interaction_graph::NodeBase | |
| distinguish_backbone_and_sidechain() const | core::pack::interaction_graph::OnTheFlyNode | inline |
| distinguish_backbone_and_sidechain(bool setting) | core::pack::interaction_graph::OnTheFlyNode | |
| distinguish_backbone_and_sidechain_ | core::pack::interaction_graph::OnTheFlyNode | private |
| DoubleLazyNode(InteractionGraphBase *owner, int node_id, int num_states) | core::pack::interaction_graph::DoubleLazyNode | |
| DoubleLazyNode() | core::pack::interaction_graph::DoubleLazyNode | private |
| DoubleLazyNode(DoubleLazyNode const &) | core::pack::interaction_graph::DoubleLazyNode | private |
| drop_all_edges() | core::pack::interaction_graph::NodeBase | |
| drop_edge(std::list< EdgeBase * >::iterator edge_iterator) | core::pack::interaction_graph::NodeBase | |
| edge_list_begin() | core::pack::interaction_graph::NodeBase | |
| edge_list_end() | core::pack::interaction_graph::NodeBase | |
| edge_vector_up_to_date_ | core::pack::interaction_graph::NodeBase | private |
| find_edge(int other_node_index) const | core::pack::interaction_graph::NodeBase | |
| FixedBBNode(InteractionGraphBase *owner, int node_id, int num_states) | core::pack::interaction_graph::FixedBBNode | inline |
| get_adjacent_dlazy_node(int index) const | core::pack::interaction_graph::DoubleLazyNode | inlineprivate |
| get_adjacent_dlazy_node(int index) | core::pack::interaction_graph::DoubleLazyNode | inlineprivate |
| get_adjacent_node(int index) const | core::pack::interaction_graph::NodeBase | inline |
| get_adjacent_node(int index) | core::pack::interaction_graph::NodeBase | inline |
| get_adjacent_otf_node(int index) | core::pack::interaction_graph::OnTheFlyNode | inlineprotected |
| get_adjacent_otf_node(int index) const | core::pack::interaction_graph::OnTheFlyNode | inlineprotected |
| get_alt_pd_energy_total() const | core::pack::interaction_graph::DoubleLazyNode | inlineprotected |
| get_alternate_state() const | core::pack::interaction_graph::DoubleLazyNode | inlineprotected |
| get_curr_pd_energy_total() const | core::pack::interaction_graph::DoubleLazyNode | inlineprotected |
| get_current_state() const | core::pack::interaction_graph::DoubleLazyNode | inline |
| get_dlazy_ig_owner() const | core::pack::interaction_graph::DoubleLazyNode | inlineprivate |
| get_dlazy_ig_owner() | core::pack::interaction_graph::DoubleLazyNode | inlineprivate |
| get_edge_vector_up_to_date() const | core::pack::interaction_graph::NodeBase | inlineprotected |
| get_incident_dlazy_edge(int index) const | core::pack::interaction_graph::DoubleLazyNode | inlineprivate |
| get_incident_dlazy_edge(int index) | core::pack::interaction_graph::DoubleLazyNode | inlineprivate |
| get_incident_edge(int index) const | core::pack::interaction_graph::NodeBase | inline |
| get_incident_edge(int index) | core::pack::interaction_graph::NodeBase | inline |
| get_incident_otf_edge(int edge) | core::pack::interaction_graph::OnTheFlyNode | inlineprotected |
| get_incident_otf_edge(int edge) const | core::pack::interaction_graph::OnTheFlyNode | inlineprotected |
| get_index_of_adjacent_node(int index) const | core::pack::interaction_graph::NodeBase | inline |
| get_node_index() const | core::pack::interaction_graph::NodeBase | inline |
| get_num_aa_types() const | core::pack::interaction_graph::OnTheFlyNode | inline |
| get_num_edges_to_larger_indexed_nodes() const | core::pack::interaction_graph::NodeBase | inline |
| get_num_edges_to_smaller_indexed_nodes() const | core::pack::interaction_graph::NodeBase | inline |
| get_num_incident_edges() const | core::pack::interaction_graph::NodeBase | inline |
| get_num_states() const | core::pack::interaction_graph::NodeBase | |
| get_num_states_for_aa_type(int aa_type) | core::pack::interaction_graph::OnTheFlyNode | inline |
| get_num_states_for_aa_types() | core::pack::interaction_graph::OnTheFlyNode | inline |
| get_num_states_for_aa_types() const | core::pack::interaction_graph::OnTheFlyNode | inline |
| get_on_the_fly_owner() | core::pack::interaction_graph::OnTheFlyNode | inlineprotected |
| get_on_the_fly_owner() const | core::pack::interaction_graph::OnTheFlyNode | inlineprotected |
| get_one_body_energy(int state) const | core::pack::interaction_graph::OnTheFlyNode | inline |
| get_one_body_energy_current_state() const | core::pack::interaction_graph::DoubleLazyNode | inline |
| get_owner() const | core::pack::interaction_graph::NodeBase | inlineprotected |
| get_owner() | core::pack::interaction_graph::NodeBase | inlineprotected |
| get_rotamer(int state) const | core::pack::interaction_graph::OnTheFlyNode | inlineprotected |
| get_sparse_mat_info_for_curr_state() const | core::pack::interaction_graph::DoubleLazyNode | inline |
| get_sparse_mat_info_for_state(int state) const | core::pack::interaction_graph::OnTheFlyNode | inline |
| get_state_offset_for_aatype(int aatype) const | core::pack::interaction_graph::OnTheFlyNode | inline |
| get_totalE() const | core::pack::interaction_graph::DoubleLazyNode | inlinevirtual |
| incident_edge_list_ | core::pack::interaction_graph::NodeBase | private |
| incident_edge_vector_ | core::pack::interaction_graph::NodeBase | private |
| neighbors_curr_state_ | core::pack::interaction_graph::DoubleLazyNode | private |
| neighbors_curr_state_sparse_info_ | core::pack::interaction_graph::DoubleLazyNode | private |
| node_index_ | core::pack::interaction_graph::NodeBase | private |
| NodeBase(InteractionGraphBase *, int node_id, int num_states) | core::pack::interaction_graph::NodeBase | |
| NodeBase() | core::pack::interaction_graph::NodeBase | private |
| NodeBase(NodeBase const &) | core::pack::interaction_graph::NodeBase | private |
| num_aa_types_ | core::pack::interaction_graph::OnTheFlyNode | private |
| num_edges_to_larger_indexed_nodes_ | core::pack::interaction_graph::NodeBase | private |
| num_edges_to_smaller_indexed_nodes_ | core::pack::interaction_graph::NodeBase | private |
| num_incident_edges_ | core::pack::interaction_graph::NodeBase | private |
| num_states_ | core::pack::interaction_graph::NodeBase | private |
| num_states_for_aatype_ | core::pack::interaction_graph::OnTheFlyNode | private |
| one_body_energies_ | core::pack::interaction_graph::OnTheFlyNode | private |
| OnTheFlyNode(InteractionGraphBase *owner, int node_id, int num_states) | core::pack::interaction_graph::OnTheFlyNode | |
| operator=(DoubleLazyNode const &) | core::pack::interaction_graph::DoubleLazyNode | private |
| owner_ | core::pack::interaction_graph::NodeBase | private |
| partial_assign_state(int new_state) | core::pack::interaction_graph::DoubleLazyNode | |
| prepare_for_simulated_annealing() override | core::pack::interaction_graph::DoubleLazyNode | virtual |
| print() const override | core::pack::interaction_graph::DoubleLazyNode | virtual |
| print_internal_energies() const | core::pack::interaction_graph::DoubleLazyNode | |
| procrastinated_ | core::pack::interaction_graph::DoubleLazyNode | private |
| project_deltaE_for_substitution(int alternate_state, core::PackerEnergy &prev_node_energy) | core::pack::interaction_graph::DoubleLazyNode | inline |
| rotamer_set_ | core::pack::interaction_graph::OnTheFlyNode | private |
| rotamers_ | core::pack::interaction_graph::OnTheFlyNode | private |
| sc_bounding_sphere(int state) const | core::pack::interaction_graph::OnTheFlyNode | inlineprotected |
| sc_bounding_spheres_ | core::pack::interaction_graph::OnTheFlyNode | private |
| set_alternate_state(int alt) | core::pack::interaction_graph::DoubleLazyNode | inlineprotected |
| set_one_body_energy(int state, core::PackerEnergy energy) | core::pack::interaction_graph::OnTheFlyNode | virtual |
| set_rotamers(rotamer_set::RotamerSetCOP rotamers) | core::pack::interaction_graph::OnTheFlyNode | |
| sparse_mat_info_for_state_ | core::pack::interaction_graph::OnTheFlyNode | private |
| state_offset_for_aatype_ | core::pack::interaction_graph::OnTheFlyNode | private |
| state_unassigned() const override | core::pack::interaction_graph::DoubleLazyNode | inlinevirtual |
| update_edge_vector() | core::pack::interaction_graph::NodeBase | protected |
| update_internal_energy_sums() | core::pack::interaction_graph::DoubleLazyNode | |
| update_internal_vectors() | core::pack::interaction_graph::DoubleLazyNode | private |
| update_one_body_energy(int state, core::PackerEnergy energy) override | core::pack::interaction_graph::OnTheFlyNode | virtual |
| zero_one_body_energies() override | core::pack::interaction_graph::OnTheFlyNode | virtual |
| zero_one_body_energy(int state) | core::pack::interaction_graph::OnTheFlyNode | virtual |
| ~DoubleLazyNode() override | core::pack::interaction_graph::DoubleLazyNode | |
| ~FixedBBNode() override | core::pack::interaction_graph::FixedBBNode | inline |
| ~NodeBase() | core::pack::interaction_graph::NodeBase | virtual |
| ~OnTheFlyNode() override | core::pack::interaction_graph::OnTheFlyNode | |
