protocols::frag_picker::CS2ndShift Class Reference

#include <CS2ndShift.hh>

Public Member Functions
	CS2ndShift ()
	CS2ndShift (CSTalosIO &input_data, bool use_sslimit)
utility::vector1< utility::vector1< std::pair< core::Size, core::Real > > >	shifts ()

Private Member Functions
std::map< char, std::map< std::string, core::Real > >	read_adjust_table (std::string const &file_name)
std::map< char, std::map< std::string, std::pair< core::Real, core::Real > > >	read_sslimit_table (std::string const &file_name)
std::string	also_check_fix_disulf (std::string instring)

Private Attributes
utility::vector1< utility::vector1< std::pair< core::Size, core::Real > > >	secondary_shifts_

Constructor & Destructor Documentation

CS2ndShift() [1/2]

protocols::frag_picker::CS2ndShift::CS2ndShift ( )

inline

CS2ndShift() [2/2]

protocols::frag_picker::CS2ndShift::CS2ndShift	(	CSTalosIO &	input_data,
		bool	use_sslimit
	)

References protocols::frag_picker::CB, protocols::frag_picker::CSTalosIO::get_sequence(), protocols::frag_picker::CSTalosIO::get_shift(), protocols::frag_picker::CSTalosIO::has_atom(), protocols::mean_field::max(), protocols::mean_field::min(), read_adjust_table(), read_sslimit_table(), and protocols::frag_picker::tr().

Member Function Documentation

also_check_fix_disulf()

std::string protocols::frag_picker::CS2ndShift::also_check_fix_disulf ( std::string  instring )

private

References core::io::raw_data::DisulfideFile::disulfides(), and protocols::hybridization::u.

read_adjust_table()

std::map< char, std::map< std::string, core::Real > > protocols::frag_picker::CS2ndShift::read_adjust_table ( std::string const &  file_name )

private

References protocols::cluster::calibur::aa, and protocols::frag_picker::tr().

Referenced by CS2ndShift().

read_sslimit_table()

std::map< char, std::map< std::string, std::pair< core::Real, core::Real > > > protocols::frag_picker::CS2ndShift::read_sslimit_table ( std::string const &  file_name )

private

References protocols::cluster::calibur::aa, protocols::mean_field::max(), protocols::mean_field::min(), and protocols::frag_picker::tr().

Referenced by CS2ndShift().

shifts()

utility::vector1< utility::vector1< std::pair< core::Size, core::Real > > > protocols::frag_picker::CS2ndShift::shifts ( )

inline

References secondary_shifts_.

Referenced by protocols::frag_picker::scores::AmbigCSScore::AmbigCSScore(), and protocols::frag_picker::scores::CSScore::CSScore().

Member Data Documentation

secondary_shifts_

utility::vector1< utility::vector1< std::pair< core::Size, core::Real > > > protocols::frag_picker::CS2ndShift::secondary_shifts_

private

Referenced by shifts().

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/CS2ndShift.hh
• src/protocols/frag_picker/CS2ndShift.cc