protocols::splice::ResidueBBDofs Class Reference

#include <SpliceManager.hh>

Inheritance diagram for protocols::splice::ResidueBBDofs:

Public Types
typedef utility::vector1< BBDofs >	bbdof_list
typedef bbdof_list::iterator	iterator
typedef bbdof_list::const_iterator	const_iterator

Public Member Functions
	ResidueBBDofs ()
	~ResidueBBDofs () override
void	cut_site (core::Size const c)
core::Size	cut_site () const
void	clear ()
void	push_back (BBDofs const &b)
const_iterator	begin () const
const_iterator	end () const
iterator	begin ()
iterator	end ()
core::Size	size () const
BBDofs &	operator[] (int const i)
core::Size	start_loop () const
void	start_loop (core::Size const s)
core::Size	stop_loop () const
void	stop_loop (core::Size const s)
std::string	source_pdb () const
void	source_pdb (std::string const &s)
std::string	tail_segment () const
void	tail_segment (std::string const &s)
core::Size	disulfide () const
void	disulfide (core::Size const s)
void	aa_sequence (std::string const &s)
std::string	aa_sequence () const
void	dssp (std::string const &s)
std::string	dssp () const
bbdof_list	bbdofs ()

Private Attributes
core::Size	cut_site_
core::Size	start_loop_
core::Size	stop_loop_
core::Size	disulfide_
bbdof_list	bbdofs_
std::string	source_pdb_
std::string	tail_segment_
std::string	aa_sequence_
std::string	dssp_

Member Typedef Documentation

bbdof_list

typedef utility::vector1< BBDofs > protocols::splice::ResidueBBDofs::bbdof_list

const_iterator

typedef bbdof_list::const_iterator protocols::splice::ResidueBBDofs::const_iterator

iterator

typedef bbdof_list::iterator protocols::splice::ResidueBBDofs::iterator

Constructor & Destructor Documentation

ResidueBBDofs()

protocols::splice::ResidueBBDofs::ResidueBBDofs ( )

inline

References clear().

~ResidueBBDofs()

protocols::splice::ResidueBBDofs::~ResidueBBDofs ( )

override

Member Function Documentation

aa_sequence() [1/2]

std::string protocols::splice::ResidueBBDofs::aa_sequence ( ) const

inline

References aa_sequence_.

aa_sequence() [2/2]

void protocols::splice::ResidueBBDofs::aa_sequence ( std::string const &  s )

inline

References aa_sequence_.

bbdofs()

bbdof_list protocols::splice::ResidueBBDofs::bbdofs ( )

inline

References bbdofs_.

begin() [1/2]

iterator protocols::splice::ResidueBBDofs::begin ( )

inline

References bbdofs_.

begin() [2/2]

const_iterator protocols::splice::ResidueBBDofs::begin ( ) const

inline

References bbdofs_.

clear()

void protocols::splice::ResidueBBDofs::clear ( )

inline

References bbdofs_.

Referenced by protocols::splice::Splice::apply(), protocols::splice::Splice::read_torsion_database(), protocols::splice::SpliceIn::read_torsion_database(), ResidueBBDofs(), and protocols::splice::SpliceManager::SpliceManager().

cut_site() [1/2]

core::Size protocols::splice::ResidueBBDofs::cut_site ( ) const

inline

References cut_site_.

cut_site() [2/2]

void protocols::splice::ResidueBBDofs::cut_site ( core::Size const  c )

inline

References cut_site_.

Referenced by protocols::splice::Splice::apply(), protocols::splice::Splice::read_torsion_database(), and protocols::splice::SpliceIn::read_torsion_database().

disulfide() [1/2]

core::Size protocols::splice::ResidueBBDofs::disulfide ( ) const

inline

References disulfide_.

Referenced by protocols::splice::Splice::apply(), and protocols::splice::Splice::read_torsion_database().

disulfide() [2/2]

void protocols::splice::ResidueBBDofs::disulfide ( core::Size const  s )

inline

References disulfide_.

dssp() [1/2]

std::string protocols::splice::ResidueBBDofs::dssp ( ) const

inline

References dssp_.

dssp() [2/2]

void protocols::splice::ResidueBBDofs::dssp ( std::string const &  s )

inline

References dssp_.

end() [1/2]

iterator protocols::splice::ResidueBBDofs::end ( )

inline

References bbdofs_.

end() [2/2]

const_iterator protocols::splice::ResidueBBDofs::end ( ) const

inline

References bbdofs_.

operator[]()

BBDofs& protocols::splice::ResidueBBDofs::operator[] ( int const  i )

inline

References bbdofs_.

push_back()

void protocols::splice::ResidueBBDofs::push_back ( BBDofs const &  b )

inline

References protocols::match::upstream::b, and bbdofs_.

Referenced by protocols::splice::Splice::apply(), protocols::splice::Splice::read_torsion_database(), and protocols::splice::SpliceIn::read_torsion_database().

size()

core::Size protocols::splice::ResidueBBDofs::size ( ) const

inline

References bbdofs_.

Referenced by protocols::splice::Splice::apply(), protocols::splice::Splice::find_dbase_entry(), protocols::splice::SpliceIn::find_dbase_entry(), protocols::splice::SpliceInTail::find_dbase_entry(), protocols::splice::min_seg(), protocols::splice::Splice::read_torsion_database(), and protocols::splice::SpliceManager::set_BB_dofs().

source_pdb() [1/2]

std::string protocols::splice::ResidueBBDofs::source_pdb ( ) const

inline

References source_pdb_.

Referenced by protocols::splice::Splice::apply(), protocols::splice::Splice::read_torsion_database(), and protocols::splice::SpliceIn::read_torsion_database().

source_pdb() [2/2]

void protocols::splice::ResidueBBDofs::source_pdb ( std::string const &  s )

inline

References source_pdb_.

start_loop() [1/2]

core::Size protocols::splice::ResidueBBDofs::start_loop ( ) const

inline

References start_loop_.

Referenced by protocols::splice::Splice::find_dbase_entry(), protocols::splice::Splice::read_torsion_database(), and protocols::splice::SpliceIn::read_torsion_database().

start_loop() [2/2]

void protocols::splice::ResidueBBDofs::start_loop ( core::Size const  s )

inline

References start_loop_.

stop_loop() [1/2]

core::Size protocols::splice::ResidueBBDofs::stop_loop ( ) const

inline

References stop_loop_.

Referenced by protocols::splice::Splice::find_dbase_entry(), protocols::splice::Splice::read_torsion_database(), and protocols::splice::SpliceIn::read_torsion_database().

stop_loop() [2/2]

void protocols::splice::ResidueBBDofs::stop_loop ( core::Size const  s )

inline

References stop_loop_.

tail_segment() [1/2]

std::string protocols::splice::ResidueBBDofs::tail_segment ( ) const

inline

References tail_segment_.

Referenced by protocols::splice::Splice::read_torsion_database().

tail_segment() [2/2]

void protocols::splice::ResidueBBDofs::tail_segment ( std::string const &  s )

inline

References tail_segment_.

Member Data Documentation

aa_sequence_

std::string protocols::splice::ResidueBBDofs::aa_sequence_

private

Referenced by aa_sequence().

bbdofs_

bbdof_list protocols::splice::ResidueBBDofs::bbdofs_

private

Referenced by bbdofs(), begin(), clear(), end(), operator[](), push_back(), and size().

cut_site_

core::Size protocols::splice::ResidueBBDofs::cut_site_

private

Referenced by cut_site().

disulfide_

core::Size protocols::splice::ResidueBBDofs::disulfide_

private

Referenced by disulfide().

dssp_

std::string protocols::splice::ResidueBBDofs::dssp_

private

Referenced by dssp().

source_pdb_

std::string protocols::splice::ResidueBBDofs::source_pdb_

private

Referenced by source_pdb().

start_loop_

core::Size protocols::splice::ResidueBBDofs::start_loop_

private

Referenced by start_loop().

stop_loop_

core::Size protocols::splice::ResidueBBDofs::stop_loop_

private

Referenced by stop_loop().

tail_segment_

std::string protocols::splice::ResidueBBDofs::tail_segment_

private

Referenced by tail_segment().

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The documentation for this class was generated from the following files:

• src/protocols/splice/SpliceManager.hh
• src/protocols/splice/Splice.cc