core::scoring::epr_deer::metrics Namespace Reference

Classes
class	DEERChiSqMethod
class	DEERData
	Base class. More...
class	DEERDecayData
	Derived class that stores DEER decay data. More...
class	DEERDistanceBounds
	Derived class for storing the data as a bounded function. @detail Contains the upper and lower bounds, as well as steepness. If the average simulated distance falls within these bounds the score is zero If the average falls outside, it is evaluated via the steepness For example: ( ( lb - d ) / s ) ^2 OR ( ( d - ub ) / s ) ^2 lb: Lower bound ub: Upper bound d: Avg distance s: Steepness. More...
class	DEERDistanceDistribution
class	DEERJaccardMethod
class	DEERJSMethod
class	DEERMiscMethod
class	DEEROverlapMethod

Typedefs
typedef utility::pointer::shared_ptr< DEERChiSqMethod >	DEERChiSqMethodOP
typedef utility::pointer::shared_ptr< DEERChiSqMethod const >	DEERChiSqMethodCOP
typedef utility::pointer::shared_ptr< DEERData >	DEERDataOP
typedef utility::pointer::shared_ptr< DEERData const >	DEERDataCOP
using	PairSizeString = std::pair< Size, std::string >
	Alias to save space when defining residues and spin labels. More...
typedef utility::pointer::shared_ptr< DEERDecayData >	DEERDecayDataOP
typedef utility::pointer::shared_ptr< DEERDecayData const >	DEERDecayDataCOP
typedef utility::pointer::shared_ptr< DEERDistanceBounds >	DEERDistanceBoundsOP
typedef utility::pointer::shared_ptr< DEERDistanceBounds const >	DEERDistanceBoundsCOP
typedef utility::pointer::shared_ptr< DEERDistanceDistribution >	DEERDistanceDistributionOP
typedef utility::pointer::shared_ptr< DEERDistanceDistribution const >	DEERDistanceDistributionCOP
typedef utility::pointer::shared_ptr< DEERJaccardMethod >	DEERJaccardMethodOP
typedef utility::pointer::shared_ptr< DEERJaccardMethod const >	DEERJaccardMethodCOP
typedef utility::pointer::shared_ptr< DEERJSMethod >	DEERJSMethodOP
typedef utility::pointer::shared_ptr< DEERJSMethod const >	DEERJSMethodCOP
typedef utility::pointer::shared_ptr< DEERMiscMethod >	DEERMiscMethodOP
typedef utility::pointer::shared_ptr< DEERMiscMethod const >	DEERMiscMethodCOP
typedef utility::pointer::shared_ptr< DEEROverlapMethod >	DEEROverlapMethodOP
typedef utility::pointer::shared_ptr< DEEROverlapMethod const >	DEEROverlapMethodCOP

Functions
static basic::Tracer	TR ("core.scoring.epr_deer.metrics.DEERData")
	Tracer used for error messages. More...
static basic::Tracer	TR ("core.scoring.epr_deer.metrics.DEERDecayData")
	Tracer used for error messages. More...
static basic::Tracer	TR ("core.scoring.epr_deer.metrics.DEERDistanceDistribution")
	Tracer used for error messages. More...

Typedef Documentation

DEERChiSqMethodCOP

typedef utility::pointer::shared_ptr< DEERChiSqMethod const > core::scoring::epr_deer::metrics::DEERChiSqMethodCOP

DEERChiSqMethodOP

typedef utility::pointer::shared_ptr< DEERChiSqMethod > core::scoring::epr_deer::metrics::DEERChiSqMethodOP

DEERDataCOP

typedef utility::pointer::shared_ptr< DEERData const > core::scoring::epr_deer::metrics::DEERDataCOP

DEERDataOP

typedef utility::pointer::shared_ptr< DEERData > core::scoring::epr_deer::metrics::DEERDataOP

DEERDecayDataCOP

typedef utility::pointer::shared_ptr< DEERDecayData const > core::scoring::epr_deer::metrics::DEERDecayDataCOP

DEERDecayDataOP

typedef utility::pointer::shared_ptr< DEERDecayData > core::scoring::epr_deer::metrics::DEERDecayDataOP

DEERDistanceBoundsCOP

typedef utility::pointer::shared_ptr< DEERDistanceBounds const > core::scoring::epr_deer::metrics::DEERDistanceBoundsCOP

DEERDistanceBoundsOP

typedef utility::pointer::shared_ptr< DEERDistanceBounds > core::scoring::epr_deer::metrics::DEERDistanceBoundsOP

DEERDistanceDistributionCOP

typedef utility::pointer::shared_ptr< DEERDistanceDistribution const > core::scoring::epr_deer::metrics::DEERDistanceDistributionCOP

DEERDistanceDistributionOP

typedef utility::pointer::shared_ptr< DEERDistanceDistribution > core::scoring::epr_deer::metrics::DEERDistanceDistributionOP

DEERJaccardMethodCOP

typedef utility::pointer::shared_ptr< DEERJaccardMethod const > core::scoring::epr_deer::metrics::DEERJaccardMethodCOP

DEERJaccardMethodOP

typedef utility::pointer::shared_ptr< DEERJaccardMethod > core::scoring::epr_deer::metrics::DEERJaccardMethodOP

DEERJSMethodCOP

typedef utility::pointer::shared_ptr< DEERJSMethod const > core::scoring::epr_deer::metrics::DEERJSMethodCOP

DEERJSMethodOP

typedef utility::pointer::shared_ptr< DEERJSMethod > core::scoring::epr_deer::metrics::DEERJSMethodOP

DEERMiscMethodCOP

typedef utility::pointer::shared_ptr< DEERMiscMethod const > core::scoring::epr_deer::metrics::DEERMiscMethodCOP

DEERMiscMethodOP

typedef utility::pointer::shared_ptr< DEERMiscMethod > core::scoring::epr_deer::metrics::DEERMiscMethodOP

DEEROverlapMethodCOP

typedef utility::pointer::shared_ptr< DEEROverlapMethod const > core::scoring::epr_deer::metrics::DEEROverlapMethodCOP

DEEROverlapMethodOP

typedef utility::pointer::shared_ptr< DEEROverlapMethod > core::scoring::epr_deer::metrics::DEEROverlapMethodOP

PairSizeString

using core::scoring::epr_deer::metrics::PairSizeString = typedef std::pair< Size, std::string >

Alias to save space when defining residues and spin labels.

Function Documentation

TR() [1/3]

static basic::Tracer core::scoring::epr_deer::metrics::TR ( "core.scoring.epr_deer.metrics.DEERData"  )

static

Tracer used for error messages.

Global to avoid re-instantiating tracer with every new object

Referenced by core::scoring::epr_deer::metrics::DEERData::print_histogram().

TR() [2/3]

static basic::Tracer core::scoring::epr_deer::metrics::TR ( "core.scoring.epr_deer.metrics.DEERDecayData"  )

static

Tracer used for error messages.

Global to avoid re-instantiating tracer with every new object

TR() [3/3]

static basic::Tracer core::scoring::epr_deer::metrics::TR ( "core.scoring.epr_deer.metrics.DEERDistanceDistribution"  )

static

Tracer used for error messages.

Global to avoid re-instantiating tracer with every new object