| aa_temp_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| apply(core::pose::Pose &pose) override | protocols::simple_moves::SampleSequenceFromProbabilities | virtual |
| cache_prefix_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| cache_suffix_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| calculate_position_diffs(std::map< core::Size, std::map< core::chemical::AA, core::Real >> &probabilities, core::pose::Pose const &pose) const | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::simple_moves::SampleSequenceFromProbabilities | virtual |
| construct_modified_sequence(core::pose::Pose &pose, std::map< core::Size, core::chemical::AA > &mutations) | protocols::simple_moves::SampleSequenceFromProbabilities | privatestatic |
| create() | protocols::moves::Mover | virtual |
| current_job_ | protocols::moves::Mover | private |
| current_tag_ | protocols::moves::Mover | private |
| delta_prob_cutoff_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| fail_on_missing_cache_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| fresh_instance() const override | protocols::simple_moves::SampleSequenceFromProbabilities | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::simple_moves::SampleSequenceFromProbabilities | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_ranked_positions(utility::vector1< std::pair< core::Size, core::Real >> &position_diffs, core::pose::Pose const &pose) const | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| info_ | protocols::moves::Mover | private |
| input_pose_ | protocols::moves::Mover | private |
| is_aa_allowed_by_task(core::pack::task::ResidueLevelTask const &rlt, core::chemical::AA aa) | protocols::simple_moves::SampleSequenceFromProbabilities | privatestatic |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| last_status_ | protocols::moves::Mover | private |
| max_mutations_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| metric_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::simple_moves::SampleSequenceFromProbabilities | static |
| name() | protocols::moves::Mover | inlinestatic |
| native_pose_ | protocols::moves::Mover | private |
| packing_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::simple_moves::SampleSequenceFromProbabilities | virtual |
| pos_temp_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| prob_cutoff_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| provide_citation_info(basic::citation_manager::CitationCollectionList &citations) const override | protocols::simple_moves::SampleSequenceFromProbabilities | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::simple_moves::SampleSequenceFromProbabilities | static |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| sample_amino_acid(std::map< core::chemical::AA, core::Real > const &aa_probs) const | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| sample_mutations(std::map< core::Size, std::map< core::chemical::AA, core::Real >> &values, core::pose::Pose const &pose) const | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| sample_positions(std::map< core::Size, std::map< core::chemical::AA, core::Real >> &values, core::pose::Pose const &pose) const | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| SampleSequenceFromProbabilities() | protocols::simple_moves::SampleSequenceFromProbabilities | |
| set_aa_temp(core::Real aa_temp) | protocols::simple_moves::SampleSequenceFromProbabilities | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_delta_prob_cutoff(core::Real delta_prob_cutoff) | protocols::simple_moves::SampleSequenceFromProbabilities | |
| set_fail_on_missing_cache(bool fail) | protocols::simple_moves::SampleSequenceFromProbabilities | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_max_mutations(core::Size max_mutations) | protocols::simple_moves::SampleSequenceFromProbabilities | |
| set_metric(core::simple_metrics::PerResidueProbabilitiesMetricCOP metric) | protocols::simple_moves::SampleSequenceFromProbabilities | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_packing(bool packing) | protocols::simple_moves::SampleSequenceFromProbabilities | |
| set_pos_temp(core::Real pos_temp) | protocols::simple_moves::SampleSequenceFromProbabilities | |
| set_prob_cutoff(core::Real prob_cutoff) | protocols::simple_moves::SampleSequenceFromProbabilities | |
| set_task_factory(core::pack::task::TaskFactoryOP &task_factory) | protocols::simple_moves::SampleSequenceFromProbabilities | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| set_use_cached_data(bool use_cache, std::string const &prefix="", std::string const &suffix="") | protocols::simple_moves::SampleSequenceFromProbabilities | |
| show(std::ostream &output=std::cout) const override | protocols::simple_moves::SampleSequenceFromProbabilities | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| task_factory_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| type_ | protocols::moves::Mover | private |
| use_cache_ | protocols::simple_moves::SampleSequenceFromProbabilities | private |
| ~SampleSequenceFromProbabilities() override | protocols::simple_moves::SampleSequenceFromProbabilities | |
