#include <OriginalScaffoldBuildPoint.hh>

Inheritance diagram for protocols::match::upstream::ProteinBackboneBuildPoint:

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Public Types
typedef core::Real	Real

typedef core::Vector	Vector

typedef ScaffoldBuildPoint	parent

Public Types inherited from protocols::match::upstream::ScaffoldBuildPoint
typedef core::Size	Size

Public Member Functions
	ProteinBackboneBuildPoint ()

	ProteinBackboneBuildPoint (core::Size index)

	~ProteinBackboneBuildPoint () override

Real	phi () const

Real	psi () const

Vector	N_pos () const

Vector	CA_pos () const

Vector	C_pos () const

Vector	O_pos () const

Vector	H_pos () const

Vector	HA_pos () const

void	phi (Real setting)
	Setters. More...

void	psi (Real setting)

void	N_pos (Vector const &setting)

void	CA_pos (Vector const &setting)

void	C_pos (Vector const &setting)

void	O_pos (Vector const &setting)

void	H_pos (Vector const &setting)

void	HA_pos (Vector const &setting)

Public Member Functions inherited from protocols::match::upstream::ScaffoldBuildPoint
	ScaffoldBuildPoint ()

	ScaffoldBuildPoint (core::Size index)

	~ScaffoldBuildPoint () override

virtual bool	compatible (ScaffoldBuildPoint const &, bool first_dispatch=true) const

virtual bool	compatible (OriginalBackboneBuildPoint const &, bool first_dispatch=true) const

virtual core::Size	original_insertion_point () const =0
	Inform the calling function where in the original scaffold this build point should be inserted. If the output pose from a matching has a different number of residues than the original scaffold, then the calling function must determine where the hit from this build point should be inserted. More...

virtual void	insert (core::Size seqpos_to_insert_at, Hit const &hit, UpstreamBuilderCOP builder, core::pose::Pose &pose) const =0

core::Size	index () const

void	index (core::Size setting)

Private Attributes
Real	phi_

Real	psi_

Vector	N_pos_

Vector	CA_pos_

Vector	C_pos_

Vector	O_pos_

Vector	H_pos_

Vector	HA_pos_

Member Typedef Documentation

◆ parent

typedef ScaffoldBuildPoint protocols::match::upstream::ProteinBackboneBuildPoint::parent

◆ Real

typedef core::Real protocols::match::upstream::ProteinBackboneBuildPoint::Real

◆ Vector

typedef core::Vector protocols::match::upstream::ProteinBackboneBuildPoint::Vector

Constructor & Destructor Documentation

◆ ProteinBackboneBuildPoint() [1/2]

protocols::match::upstream::ProteinBackboneBuildPoint::ProteinBackboneBuildPoint ( )

Initialize the coordinates to bogus yet numically palpable values. If someone should accidentally try to construct a coordinate frame from CA pointing toward CB reading from uninitialized variables, they wouldn't hit a divide-by-zero error that might occur if CA and C were both at the origin.

◆ ProteinBackboneBuildPoint() [2/2]

protocols::match::upstream::ProteinBackboneBuildPoint::ProteinBackboneBuildPoint ( core::Size index )

◆ ~ProteinBackboneBuildPoint()

protocols::match::upstream::ProteinBackboneBuildPoint::~ProteinBackboneBuildPoint ( )

overridedefault

Member Function Documentation

◆ C_pos() [1/2]

Vector protocols::match::upstream::ProteinBackboneBuildPoint::C_pos ( ) const

inline

References C_pos_.

Referenced by protocols::match::upstream::ProteinUpstreamBuilder::compute_cb_frame(), and protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue().

◆ C_pos() [2/2]

void protocols::match::upstream::ProteinBackboneBuildPoint::C_pos ( Vector const & setting )

References C_pos_.

◆ CA_pos() [1/2]

Vector protocols::match::upstream::ProteinBackboneBuildPoint::CA_pos ( ) const

inline

References CA_pos_.

Referenced by protocols::match::upstream::ProteinUpstreamBuilder::compute_cb_frame(), and protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue().

◆ CA_pos() [2/2]

void protocols::match::upstream::ProteinBackboneBuildPoint::CA_pos ( Vector const & setting )

References CA_pos_.

◆ H_pos() [1/2]

Vector protocols::match::upstream::ProteinBackboneBuildPoint::H_pos ( ) const

inline

References H_pos_.

Referenced by protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue().

◆ H_pos() [2/2]

void protocols::match::upstream::ProteinBackboneBuildPoint::H_pos ( Vector const & setting )

References H_pos_.

◆ HA_pos() [1/2]

Vector protocols::match::upstream::ProteinBackboneBuildPoint::HA_pos ( ) const

inline

References HA_pos_.

Referenced by protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue().

◆ HA_pos() [2/2]

void protocols::match::upstream::ProteinBackboneBuildPoint::HA_pos ( Vector const & setting )

References HA_pos_.

◆ N_pos() [1/2]

Vector protocols::match::upstream::ProteinBackboneBuildPoint::N_pos ( ) const

inline

References N_pos_.

Referenced by protocols::match::upstream::ProteinUpstreamBuilder::compute_cb_frame(), and protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue().

◆ N_pos() [2/2]

void protocols::match::upstream::ProteinBackboneBuildPoint::N_pos ( Vector const & setting )

References N_pos_.

◆ O_pos() [1/2]

Vector protocols::match::upstream::ProteinBackboneBuildPoint::O_pos ( ) const

inline

References O_pos_.

Referenced by protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue().

◆ O_pos() [2/2]

void protocols::match::upstream::ProteinBackboneBuildPoint::O_pos ( Vector const & setting )

References O_pos_.

◆ phi() [1/2]

Real protocols::match::upstream::ProteinBackboneBuildPoint::phi ( ) const

inline

References phi_.

Referenced by protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue().

◆ phi() [2/2]

void protocols::match::upstream::ProteinBackboneBuildPoint::phi ( Real setting )

Setters.

References phi_.

◆ psi() [1/2]

Real protocols::match::upstream::ProteinBackboneBuildPoint::psi ( ) const

inline

References psi_.

Referenced by protocols::match::upstream::OriginalBackboneBuildPoint::initialize_from_residue().

◆ psi() [2/2]

void protocols::match::upstream::ProteinBackboneBuildPoint::psi ( Real setting )

References psi_.

Member Data Documentation

◆ C_pos_

Vector protocols::match::upstream::ProteinBackboneBuildPoint::C_pos_

private

Referenced by C_pos().

◆ CA_pos_

Vector protocols::match::upstream::ProteinBackboneBuildPoint::CA_pos_

private

Referenced by CA_pos().

◆ H_pos_

Vector protocols::match::upstream::ProteinBackboneBuildPoint::H_pos_

private

Referenced by H_pos().

◆ HA_pos_

Vector protocols::match::upstream::ProteinBackboneBuildPoint::HA_pos_

private

Referenced by HA_pos().

◆ N_pos_

Vector protocols::match::upstream::ProteinBackboneBuildPoint::N_pos_

private

Referenced by N_pos().

◆ O_pos_

Vector protocols::match::upstream::ProteinBackboneBuildPoint::O_pos_

private

Referenced by O_pos().

◆ phi_

Real protocols::match::upstream::ProteinBackboneBuildPoint::phi_

private

Referenced by phi().

◆ psi_

Real protocols::match::upstream::ProteinBackboneBuildPoint::psi_

private

Referenced by psi().

The documentation for this class was generated from the following files:

src/protocols/match/upstream/OriginalScaffoldBuildPoint.hh
src/protocols/match/upstream/OriginalScaffoldBuildPoint.cc

Public Types

Public Member Functions

Private Attributes

Member Typedef Documentation

◆ parent

◆ Real

◆ Vector

Constructor & Destructor Documentation

◆ ProteinBackboneBuildPoint() [1/2]

◆ ProteinBackboneBuildPoint() [2/2]

◆ ~ProteinBackboneBuildPoint()

Member Function Documentation

◆ C_pos() [1/2]

◆ C_pos() [2/2]

◆ CA_pos() [1/2]

◆ CA_pos() [2/2]

◆ H_pos() [1/2]

◆ H_pos() [2/2]

◆ HA_pos() [1/2]

◆ HA_pos() [2/2]

◆ N_pos() [1/2]

◆ N_pos() [2/2]

◆ O_pos() [1/2]

◆ O_pos() [2/2]

◆ phi() [1/2]

◆ phi() [2/2]

◆ psi() [1/2]

◆ psi() [2/2]

Member Data Documentation

◆ C_pos_

◆ CA_pos_

◆ H_pos_

◆ HA_pos_

◆ N_pos_

◆ O_pos_

◆ phi_

◆ psi_