| acknowledge_substitution_surface() | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| add_edge(BackgroundToFirstClassEdge< V, E, G > *edge_ptr) | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| adjacent_first_class_node_indices_ | core::pack::interaction_graph::BackgroundNode< V, E, G > | private |
| adjacent_nodes_ | core::pack::interaction_graph::BackgroundNode< V, E, G > | private |
| alt_state_total_hASA_ | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | private |
| average_residue_hASA() const | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| average_residue_hASA(chemical::AA residue_type, Size num_nbs) const | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| BackgroundEdgeList typedef | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| BackgroundEdgeListIter typedef | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| BackgroundEdgeVector typedef | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| BackgroundEdgeVectorIter typedef | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| BackgroundNode(AdditionalBackgroundNodesInteractionGraph< V, E, G > *owner, int node_index) | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| BackgroundNode() | core::pack::interaction_graph::BackgroundNode< V, E, G > | private |
| BackgroundNode(BackgroundNode< V, E, G > const &) | core::pack::interaction_graph::BackgroundNode< V, E, G > | private |
| BURIED_RESIDUE_NO_HSASA_CUTOFF | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | privatestatic |
| calculate_amount_total_hydrophobic_ASA() | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| count_dynamic_memory() const override | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | virtual |
| count_static_memory() const override | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | virtual |
| curr_state_total_hASA_ | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | private |
| detect_neighborship(SurfaceNode< V, E, G > *node) const | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| drop_edge(BackgroundEdgeListIter edge) | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| edge_list_ | core::pack::interaction_graph::BackgroundNode< V, E, G > | private |
| edge_vector_ | core::pack::interaction_graph::BackgroundNode< V, E, G > | private |
| edge_vector_up_to_date_ | core::pack::interaction_graph::BackgroundNode< V, E, G > | private |
| find_edge(int fc_node_index) | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| FirstClassNodeVector typedef | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| get_adjacent_first_class_node(int index) const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_alt_hASA() | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| get_current_hASA() | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| get_edge_vector_up_to_date() const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_incident_edge(int index) const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_index_of_adjacent_first_class_node(int index) const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_node_index() const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_num_incident_edges() const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_owner() const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_surface_bg_edge(int index) | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | inlineprotected |
| get_surface_owner() const | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | inlineprotected |
| get_surface_score() const | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| hASA_energy(Real patch_area) const | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| have_prepared_for_simA_ | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | private |
| init_hASA_variables() | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| initialize_num_neighbors_counting_self() const | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| INTERACTION_RADIUS | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | privatestatic |
| is_below_buried_residue_no_hsasa_cutoff() const | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| is_below_buried_residue_no_hsasa_cutoff(bool value) | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| is_below_buried_residue_no_hsasa_cutoff_ | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | private |
| is_surface_exposed() const | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| MAX_PATCH_SURFACE_AREA | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | privatestatic |
| MAX_SURFACE_ENERGY | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | privatestatic |
| node_index_ | core::pack::interaction_graph::BackgroundNode< V, E, G > | private |
| num_incident_edges_ | core::pack::interaction_graph::BackgroundNode< V, E, G > | private |
| num_neighbors_counting_self() const | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| num_neighbors_counting_self_ | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | mutableprivate |
| operator=(SurfaceBackgroundNode< V, E, G > const &) | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | private |
| owner_ | core::pack::interaction_graph::BackgroundNode< V, E, G > | private |
| parent typedef | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| prepare_for_simulated_annealing() override | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | virtual |
| print() const override | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | virtual |
| project_surface_deltaE_for_substitution(SurfaceNode< V, E, G > *fc_node_changing, int changing_nodes_curr_state, int changing_nodes_alt_state) | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| reset_alt_state_total_hASA() | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| surface_energy_weight_ | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | privatestatic |
| surface_exposed(bool value) | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| surface_exposed_ | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | private |
| SURFACE_EXPOSED_CUTOFF | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | privatestatic |
| SurfaceBackgroundNode(AdditionalBackgroundNodesInteractionGraph< V, E, G > *owner, int node_index) | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
| SurfaceBackgroundNode() | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | private |
| SurfaceBackgroundNode(SurfaceBackgroundNode< V, E, G > const &) | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | private |
| update_edge_vector() | core::pack::interaction_graph::BackgroundNode< V, E, G > | protected |
| wt_residue_for_node() const | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | inline |
| ~BackgroundNode() | core::pack::interaction_graph::BackgroundNode< V, E, G > | virtual |
| ~SurfaceBackgroundNode() override | core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > | |
