protocols::frag_picker::nonlocal::NonlocalPair Class Reference

represents a nonlocal fragment pair. More...

#include <NonlocalPair.hh>

Inheritance diagram for protocols::frag_picker::nonlocal::NonlocalPair:

Public Member Functions
	NonlocalPair (core::Size query_pos_i, core::Size query_pos_j, Candidate candidate_i, Candidate candidate_j, core::Size candidate_i_rank, core::Size candidate_j_rank, utility::vector1< ContactOP > &contacts)
	~NonlocalPair () override
utility::vector1< ContactOP > &	get_contacts ()
Candidate	get_candidate_i ()
Candidate	get_candidate_j ()
core::Size	get_candidate_i_rank ()
core::Size	get_candidate_j_rank ()
core::Size	get_query_pos_i ()
core::Size	get_query_pos_j ()
void	print (std::ostream &out)

Private Attributes
core::Size	query_position_i_
core::Size	query_position_j_
Candidate	candidate_i_
Candidate	candidate_j_
core::Size	candidate_i_rank_
core::Size	candidate_j_rank_
utility::vector1< ContactOP >	contacts_

Detailed Description

represents a nonlocal fragment pair.

NonlocalPair contains query start positions for each fragment of pair i and j, and their corresponding fragment candidate

Constructor & Destructor Documentation

NonlocalPair()

protocols::frag_picker::nonlocal::NonlocalPair::NonlocalPair ( core::Size  query_pos_i, core::Size  query_pos_j, Candidate  candidate_i, Candidate  candidate_j, core::Size  candidate_i_rank, core::Size  candidate_j_rank, utility::vector1< ContactOP > &  contacts  )

inline

References candidate_i_, candidate_i_rank_, candidate_j_, candidate_j_rank_, contacts_, query_position_i_, and query_position_j_.

~NonlocalPair()

protocols::frag_picker::nonlocal::NonlocalPair::~NonlocalPair ( )

inlineoverride

Member Function Documentation

get_candidate_i()

Candidate protocols::frag_picker::nonlocal::NonlocalPair::get_candidate_i ( )

inline

References candidate_i_.

get_candidate_i_rank()

core::Size protocols::frag_picker::nonlocal::NonlocalPair::get_candidate_i_rank ( )

inline

References candidate_i_rank_.

get_candidate_j()

Candidate protocols::frag_picker::nonlocal::NonlocalPair::get_candidate_j ( )

inline

References candidate_j_.

get_candidate_j_rank()

core::Size protocols::frag_picker::nonlocal::NonlocalPair::get_candidate_j_rank ( )

inline

References candidate_j_rank_.

get_contacts()

utility::vector1<ContactOP>& protocols::frag_picker::nonlocal::NonlocalPair::get_contacts ( )

inline

References contacts_.

get_query_pos_i()

core::Size protocols::frag_picker::nonlocal::NonlocalPair::get_query_pos_i ( )

inline

References query_position_i_.

get_query_pos_j()

core::Size protocols::frag_picker::nonlocal::NonlocalPair::get_query_pos_j ( )

inline

References query_position_j_.

print()

void protocols::frag_picker::nonlocal::NonlocalPair::print ( std::ostream &  out )

inline

References candidate_i_, candidate_i_rank_, candidate_j_, candidate_j_rank_, protocols::frag_picker::contact_name(), contacts_, core::conformation::membrane::out, query_position_i_, and query_position_j_.

Member Data Documentation

candidate_i_

Candidate protocols::frag_picker::nonlocal::NonlocalPair::candidate_i_

private

Referenced by get_candidate_i(), NonlocalPair(), and print().

candidate_i_rank_

core::Size protocols::frag_picker::nonlocal::NonlocalPair::candidate_i_rank_

private

Referenced by get_candidate_i_rank(), NonlocalPair(), and print().

candidate_j_

Candidate protocols::frag_picker::nonlocal::NonlocalPair::candidate_j_

private

Referenced by get_candidate_j(), NonlocalPair(), and print().

candidate_j_rank_

core::Size protocols::frag_picker::nonlocal::NonlocalPair::candidate_j_rank_

private

Referenced by get_candidate_j_rank(), NonlocalPair(), and print().

contacts_

utility::vector1<ContactOP> protocols::frag_picker::nonlocal::NonlocalPair::contacts_

private

Referenced by get_contacts(), NonlocalPair(), and print().

query_position_i_

core::Size protocols::frag_picker::nonlocal::NonlocalPair::query_position_i_

private

Referenced by get_query_pos_i(), NonlocalPair(), and print().

query_position_j_

core::Size protocols::frag_picker::nonlocal::NonlocalPair::query_position_j_

private

Referenced by get_query_pos_j(), NonlocalPair(), and print().

---

The documentation for this class was generated from the following file:

• src/protocols/frag_picker/nonlocal/NonlocalPair.hh