#include <WriteUpstreamCoordinateKineamge.hh>

Inheritance diagram for protocols::match::output::WriteUpstreamHitKinemage:

Public Member Functions
	WriteUpstreamHitKinemage ()

	WriteUpstreamHitKinemage (std::string const &fname)

	WriteUpstreamHitKinemage (std::ostream &ostr)

	~WriteUpstreamHitKinemage () override

void	process_hit (Hit const &hit, core::conformation::Residue const &upstream_conformation) override

void	output_hit (Hit const &hit, core::conformation::Residue const &upstream_conformation)
	Non-virtual method to write out a kinemage for an upstream residue. More...

void	output_upstream_coordinates (upstream_hit const &hit, core::conformation::Residue const &upstream_conformation)
	non-virtual method to write out a kinemage for an upstream residue; without invoking dswriter_->write_downstream_coordinates(). Only information about the upstream portion of the hit is needed. More...

void	start_new_match ()

void	set_kinemage_file (std::string const &fname)

void	set_dswriter (DownstreamCoordinateKinemageWriterOP dswriter)

void	geom_id (core::Size setting)

void	set_master (std::string const &master)
	Set the kinemage master for the upstream residue, overriding the default master, which is "geom#". More...

void	default_master (bool setting)
	Set whether the default master should be used, or whether the user-defined master should be used. If the user defined master is the empty string, no master will be writen. More...

bool	default_master () const
	Returns whether or not the default master is being used. More...

void	animate (bool setting)

void	dominant (bool setting)

void	group (bool setting)

void	write_virtual_atoms (bool setting)

Public Member Functions inherited from protocols::match::upstream::UpstreamResidueProcessor
	~UpstreamResidueProcessor () override

Private Attributes
core::Size	matches_output_count_

bool	use_default_master_

std::string	master_

bool	animate_

bool	dominant_

bool	group_

bool	write_virtual_atoms_

core::Size	geom_id_

std::string	kinemage_file_name_

std::ofstream	file_out_

std::ostream &	ostr_

DownstreamCoordinateKinemageWriterOP	dswriter_

Constructor & Destructor Documentation

◆ WriteUpstreamHitKinemage() [1/3]

protocols::match::output::WriteUpstreamHitKinemage::WriteUpstreamHitKinemage ( )

◆ WriteUpstreamHitKinemage() [2/3]

protocols::match::output::WriteUpstreamHitKinemage::WriteUpstreamHitKinemage ( std::string const & fname )

References file_out_, and kinemage_file_name_.

◆ WriteUpstreamHitKinemage() [3/3]

protocols::match::output::WriteUpstreamHitKinemage::WriteUpstreamHitKinemage ( std::ostream & ostr )

◆ ~WriteUpstreamHitKinemage()

protocols::match::output::WriteUpstreamHitKinemage::~WriteUpstreamHitKinemage ( )

override

References file_out_.

Member Function Documentation

◆ animate()

void protocols::match::output::WriteUpstreamHitKinemage::animate ( bool setting )

References animate_.

◆ default_master() [1/2]

bool protocols::match::output::WriteUpstreamHitKinemage::default_master ( ) const

Returns whether or not the default master is being used.

References use_default_master_.

◆ default_master() [2/2]

void protocols::match::output::WriteUpstreamHitKinemage::default_master ( bool setting )

Set whether the default master should be used, or whether the user-defined master should be used. If the user defined master is the empty string, no master will be writen.

References use_default_master_.

◆ dominant()

void protocols::match::output::WriteUpstreamHitKinemage::dominant ( bool setting )

References dominant_.

◆ geom_id()

void protocols::match::output::WriteUpstreamHitKinemage::geom_id ( core::Size setting )

References dswriter_, geom_id_, and core::id::to_string().

◆ group()

void protocols::match::output::WriteUpstreamHitKinemage::group ( bool setting )

References group_.

◆ output_hit()

void protocols::match::output::WriteUpstreamHitKinemage::output_hit	(	Hit const &	hit,
		core::conformation::Residue const &	upstream_conformation
	)

Non-virtual method to write out a kinemage for an upstream residue.

References dswriter_, ostr_, and output_upstream_coordinates().

Referenced by process_hit().

◆ output_upstream_coordinates()

void protocols::match::output::WriteUpstreamHitKinemage::output_upstream_coordinates	(	upstream_hit const &	hit,
		core::conformation::Residue const &	upstream_conformation
	)

non-virtual method to write out a kinemage for an upstream residue; without invoking dswriter_->write_downstream_coordinates(). Only information about the upstream portion of the hit is needed.

References protocols::match::output::ResidueKinemageWriter::animate(), animate_, protocols::match::output::ResidueKinemageWriter::dominant(), dominant_, geom_id_, protocols::match::output::ResidueKinemageWriter::group(), group_, protocols::match::output::ResidueKinemageWriter::master(), master_, ostr_, protocols::match::upstream_hit::scaffold_build_id(), core::id::to_string(), protocols::match::upstream_hit::upstream_conf_id(), use_default_master_, and protocols::match::output::ResidueKinemageWriter::write_rsd_coords().