| apply(core::pose::Pose &pose) override | protocols::membrane::AqueousPoreFinder | virtual |
| AqueousPoreFinder() | protocols::membrane::AqueousPoreFinder | |
| AqueousPoreFinder(AqueousPoreFinder const &src) | protocols::membrane::AqueousPoreFinder | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::membrane::AqueousPoreFinder | virtual |
| construct_aqueous_pore(core::Real const z_axis_buffer, core::Real const ellipse_radius_buffer, utility::vector1< core::Real > ellipse_locations, utility::vector1< numeric::linear_algebra::EllipseParametersOP > ellipse_parameters) const | protocols::membrane::AqueousPoreFinder | private |
| create() | protocols::moves::Mover | virtual |
| current_job_ | protocols::moves::Mover | private |
| current_tag_ | protocols::moves::Mover | private |
| distribute_coords_into_bins(utility::vector1< numeric::xyzVector< core::Real > > aqueous_coords, core::Real const binsize) const | protocols::membrane::AqueousPoreFinder | private |
| find_max_z(utility::vector1< numeric::xyzVector< core::Real > > coords) const | protocols::membrane::AqueousPoreFinder | private |
| find_min_z(utility::vector1< numeric::xyzVector< core::Real > > coords) const | protocols::membrane::AqueousPoreFinder | private |
| fresh_instance() const override | protocols::membrane::AqueousPoreFinder | virtual |
| generate_cubic_polynomial_func(core::Real const start_coord, core::Real const start_value, core::Real const start_deriv, core::Real const end_coord, core::Real const end_value, core::Real const end_deriv) const | protocols::membrane::AqueousPoreFinder | private |
| generate_piecewise_cubic_poly_func(utility::vector1< core::Real > ellipse_locations, utility::vector1< core::Real > ellipse_parameters, core::Real const min_value, core::Real const max_value) const | protocols::membrane::AqueousPoreFinder | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_dummy_rotation_matrix() const | protocols::membrane::AqueousPoreFinder | |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::membrane::AqueousPoreFinder | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_rotation_angle(numeric::linear_algebra::EllipseParametersOP ellipse) const | protocols::membrane::AqueousPoreFinder | private |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| info_ | protocols::moves::Mover | private |
| input_pose_ | protocols::moves::Mover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| last_status_ | protocols::moves::Mover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::membrane::AqueousPoreFinder | static |
| name() | protocols::moves::Mover | inlinestatic |
| native_pose_ | protocols::moves::Mover | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::membrane::AqueousPoreFinder | virtual |
| piecewise_poly typedef | protocols::membrane::AqueousPoreFinder | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::membrane::AqueousPoreFinder | static |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const override | protocols::membrane::AqueousPoreFinder | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| tolerance_ | protocols::membrane::AqueousPoreFinder | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| type_ | protocols::moves::Mover | private |
| update_mp_geo_pore(core::pose::Pose &pose, core::conformation::membrane::AqueousPoreParametersOP aqueous_pore) | protocols::membrane::AqueousPoreFinder | |
| ~AqueousPoreFinder() override | protocols::membrane::AqueousPoreFinder | |
