| add_other_pose(core::pose::PoseOP pose) | core::pose::full_model_info::FullModelInfo | |
| add_submotif_info(utility::vector1< Size > const &res_list, std::string const &tag, bool const &seed=false) | core::pose::full_model_info::FullModelInfo | |
| add_submotif_info(utility::vector1< SubMotifInfoOP > submotif_info_list) | core::pose::full_model_info::FullModelInfo | |
| add_submotif_info(SubMotifInfoOP submotif_info_op) | core::pose::full_model_info::FullModelInfo | |
| alignment_anchor_res() const | core::pose::full_model_info::FullModelInfo | |
| calc_rms_res() const | core::pose::full_model_info::FullModelInfo | |
| chains_in_full_model() const | core::pose::full_model_info::FullModelInfo | |
| clear_other_pose_list() | core::pose::full_model_info::FullModelInfo | |
| clear_res_list() | core::pose::full_model_info::FullModelInfo | |
| clone() const override | core::pose::full_model_info::FullModelInfo | inline |
| clone_info() const | core::pose::full_model_info::FullModelInfo | inline |
| conventional_chains() const | core::pose::full_model_info::FullModelInfo | |
| conventional_numbering() const | core::pose::full_model_info::FullModelInfo | |
| conventional_segids() const | core::pose::full_model_info::FullModelInfo | |
| cutpoint_open_in_full_model() const | core::pose::full_model_info::FullModelInfo | |
| cyclize_res() const | core::pose::full_model_info::FullModelInfo | |
| delete_submotif_info(utility::vector1< Size > const &res_list, std::string const &tag, bool const &seed=false) | core::pose::full_model_info::FullModelInfo | |
| delete_submotif_info(utility::vector1< SubMotifInfoOP > submotif_info_list) | core::pose::full_model_info::FullModelInfo | |
| delete_submotif_info(SubMotifInfoOP submotif_info_op) | core::pose::full_model_info::FullModelInfo | |
| disulfide_pairs() const | core::pose::full_model_info::FullModelInfo | |
| dock_domain_map() const | core::pose::full_model_info::FullModelInfo | |
| extra_minimize_res() const | core::pose::full_model_info::FullModelInfo | |
| find_index_in_other_pose_list(pose::Pose const &pose) const | core::pose::full_model_info::FullModelInfo | |
| fiveprime_cap() const | core::pose::full_model_info::FullModelInfo | |
| fixed_domain_map() const | core::pose::full_model_info::FullModelInfo | |
| full_model_parameters() const | core::pose::full_model_info::FullModelInfo | |
| full_model_parameters_ | core::pose::full_model_info::FullModelInfo | private |
| full_sequence() const | core::pose::full_model_info::FullModelInfo | |
| full_to_sub(utility::vector1< Size > const &res_in_full_model_numbering) const | core::pose::full_model_info::FullModelInfo | |
| full_to_sub(Size const res_in_full_model_numbering) const | core::pose::full_model_info::FullModelInfo | |
| full_to_sub() const | core::pose::full_model_info::FullModelInfo | |
| FullModelInfo(std::string const &full_sequence, utility::vector1< Size > const &cutpoint_open_in_full_model, utility::vector1< Size > const &res_numbers_in_pose) | core::pose::full_model_info::FullModelInfo | |
| FullModelInfo(FullModelParametersCOP full_model_parameters) | core::pose::full_model_info::FullModelInfo | |
| FullModelInfo(pose::Pose &pose) | core::pose::full_model_info::FullModelInfo | |
| FullModelInfo(FullModelInfo const &src) | core::pose::full_model_info::FullModelInfo | |
| get_cutpoint_open_from_pdb_info(pose::Pose const &pose) const | core::pose::full_model_info::FullModelInfo | private |
| get_idx_for_other_pose(pose::Pose const &pose) const | core::pose::full_model_info::FullModelInfo | |
| get_idx_for_other_pose_with_residue(Size const input_res) const | core::pose::full_model_info::FullModelInfo | |
| get_idx_for_other_pose_with_residues(utility::vector1< Size > const &input_res) const | core::pose::full_model_info::FullModelInfo | |
| get_sequence_with_gaps_filled_with_n(pose::Pose const &pose, std::string &sequence, utility::vector1< Size > &full_numbering) const | core::pose::full_model_info::FullModelInfo | private |
| global_mapping() const | core::pose::full_model_info::FullModelInfo | |
| global_sequence() const | core::pose::full_model_info::FullModelInfo | |
| in_a_submotif(utility::vector1< Size > const &res_list, bool const &check_other_poses=false) const | core::pose::full_model_info::FullModelInfo | |
| in_a_submotif_seed(utility::vector1< Size > const &res_list, bool const &check_other_poses=false) const | core::pose::full_model_info::FullModelInfo | |
| input_domain_map() const | core::pose::full_model_info::FullModelInfo | |
| is_a_submotif() const | core::pose::full_model_info::FullModelInfo | |
| is_a_submotif(utility::vector1< Size > const &res_list, bool const &check_other_poses=false) const | core::pose::full_model_info::FullModelInfo | |
| is_a_submotif_seed() const | core::pose::full_model_info::FullModelInfo | |
| is_a_submotif_seed(utility::vector1< Size > const &res_list, bool const &check_other_poses=false) const | core::pose::full_model_info::FullModelInfo | |
| jump_pairs() const | core::pose::full_model_info::FullModelInfo | |
| jump_res_map() const | core::pose::full_model_info::FullModelInfo | |
| other_pose_list() const | core::pose::full_model_info::FullModelInfo | inline |
| other_pose_list_ | core::pose::full_model_info::FullModelInfo | private |
| preferred_root_res() const | core::pose::full_model_info::FullModelInfo | |
| remove_other_pose_at_idx(Size const idx) | core::pose::full_model_info::FullModelInfo | |
| res_list() const | core::pose::full_model_info::FullModelInfo | inline |
| res_list_ | core::pose::full_model_info::FullModelInfo | private |
| rna_anti_chi_res() const | core::pose::full_model_info::FullModelInfo | |
| rna_block_stack_above_res() const | core::pose::full_model_info::FullModelInfo | |
| rna_block_stack_below_res() const | core::pose::full_model_info::FullModelInfo | |
| rna_bulge_res() const | core::pose::full_model_info::FullModelInfo | |
| rna_sample_sugar_res() const | core::pose::full_model_info::FullModelInfo | |
| rna_syn_chi_res() const | core::pose::full_model_info::FullModelInfo | |
| rna_terminal_res() const | core::pose::full_model_info::FullModelInfo | |
| sample_res() const | core::pose::full_model_info::FullModelInfo | |
| set_full_model_parameters(FullModelParametersCOP setting) | core::pose::full_model_info::FullModelInfo | |
| set_other_pose_list(utility::vector1< pose::PoseOP > const &setting) | core::pose::full_model_info::FullModelInfo | |
| set_res_list(utility::vector1< Size > const &res_list) | core::pose::full_model_info::FullModelInfo | inline |
| show_submotif_info_list(bool const &for_all_poses=false) const | core::pose::full_model_info::FullModelInfo | |
| size() const | core::pose::full_model_info::FullModelInfo | |
| sub_to_full(utility::vector1< Size > const &res) const | core::pose::full_model_info::FullModelInfo | |
| sub_to_full(Size const &res) const | core::pose::full_model_info::FullModelInfo | |
| submotif_info(utility::vector1< Size > const &res_list, bool const &check_other_poses=false) const | core::pose::full_model_info::FullModelInfo | |
| submotif_info_containing_residues(utility::vector1< Size > const &res_list, bool const &check_other_poses=false) const | core::pose::full_model_info::FullModelInfo | |
| submotif_info_list() const | core::pose::full_model_info::FullModelInfo | inline |
| submotif_info_list_ | core::pose::full_model_info::FullModelInfo | mutableprivate |
| twoprime_res() const | core::pose::full_model_info::FullModelInfo | |
| update_submotif_info_list() | core::pose::full_model_info::FullModelInfo | |
| working_res() const | core::pose::full_model_info::FullModelInfo | |
| ~FullModelInfo() override | core::pose::full_model_info::FullModelInfo | |
