| allowed_loop_abegos_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| apply(Pose &pose) override | protocols::pose_length_moves::NearNativeLoopCloser | virtual |
| chainAfterLoop_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| chainBeforeLoop_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::pose_length_moves::NearNativeLoopCloser | inlinevirtual |
| close_loop(Pose &pose) | protocols::pose_length_moves::NearNativeLoopCloser | |
| closure_type_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| combine_chains(Pose &pose) | protocols::pose_length_moves::NearNativeLoopCloser | |
| create() | protocols::moves::Mover | virtual |
| create_maximum_length_pose(char resTypeBeforeLoop, char resTypeAfterLoop, core::pose::Pose pose) | protocols::pose_length_moves::NearNativeLoopCloser | |
| create_potential_loops(core::pose::Pose pose) | protocols::pose_length_moves::NearNativeLoopCloser | |
| current_job_ | protocols::moves::Mover | private |
| current_tag_ | protocols::moves::Mover | private |
| extendRegion(bool towardCTerm, core::Size resStart, char neighborResType, core::Size numberAddRes, core::pose::PoseOP &poseOP) | protocols::pose_length_moves::NearNativeLoopCloser | |
| fragment_store_compression_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| fragment_store_format_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| fragment_store_path_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() override | protocols::pose_length_moves::NearNativeLoopCloser | virtual |
| get_additional_output_with_rmsd(core::Real &return_rmsd) | protocols::pose_length_moves::NearNativeLoopCloser | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::pose_length_moves::NearNativeLoopCloser | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| ideal_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| idealExtension_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| info_ | protocols::moves::Mover | private |
| input_pose_ | protocols::moves::Mover | private |
| label_loop_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| last_status_ | protocols::moves::Mover | private |
| loopLengthRangeHigh_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| loopLengthRangeLow_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| max_number_of_results_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| max_vdw_change_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::pose_length_moves::NearNativeLoopCloser | static |
| name() | protocols::moves::Mover | inlinestatic |
| native_pose_ | protocols::moves::Mover | private |
| NearNativeLoopCloser() | protocols::pose_length_moves::NearNativeLoopCloser | |
| NearNativeLoopCloser(int resAdjustmentStartLow, int resAdjustmentStartHigh, int resAdjustmentStopLow, int resAdjustmentStopHigh, int resAdjustmentStartLow_sheet, int resAdjustmentStartHigh_sheet, int resAdjustmentStopLow_sheet, int resAdjustmentStopHigh_sheet, core::Size loopLengthRangeLow, core::Size loopLengthRangeHigh, core::Size resBeforeLoop, core::Size resAfterLoop, char chainBeforeLoop, char chainAfterLoop, core::Real rmsThreshold, core::Real max_vdw_change, bool idealExtension, bool ideal, bool output_closed, std::string closure_type="lookback", std::string allowed_loop_abegos="", std::string label_loop="", std::string fragment_store_path="", std::string fragment_store_format="", std::string fragment_store_compression="", core::Size numb_stubs_to_consider=1) | protocols::pose_length_moves::NearNativeLoopCloser | |
| numb_outputed_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| numb_stubs_to_consider_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| output_all_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| output_closed_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override | protocols::pose_length_moves::NearNativeLoopCloser | virtual |
| Pose typedef | protocols::moves::Mover | |
| pose_name_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| PoseCOP typedef | protocols::moves::Mover | |
| possibleLoops_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::pose_length_moves::NearNativeLoopCloser | static |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| resAdjustmentStartHigh_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| resAdjustmentStartHigh_sheet_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| resAdjustmentStartLow_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| resAdjustmentStartLow_sheet_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| resAdjustmentStopHigh_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| resAdjustmentStopHigh_sheet_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| resAdjustmentStopLow_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| resAdjustmentStopLow_sheet_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| resAfterLoop_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| resBeforeLoop_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| reset_status() | protocols::moves::Mover | |
| rmsThreshold_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| SSHashedFragmentStoreOP_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| Strings typedef | protocols::moves::Mover | |
| switch_chain_order(Pose &pose, utility::vector1< core::Size > new_chain_order) | protocols::pose_length_moves::NearNativeLoopCloser | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| top_outputed_ | protocols::pose_length_moves::NearNativeLoopCloser | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| type_ | protocols::moves::Mover | private |
