Rosetta
core::chemical::ResidueType Member List

This is the complete list of members for core::chemical::ResidueType, including all inherited members.

aa(AA const &type)core::chemical::ResidueTypeBaseinline
aa(std::string const &type)core::chemical::ResidueTypeBaseinline
aa() constcore::chemical::ResidueTypeBaseinline
aa_core::chemical::ResidueTypeBaseprivate
abase2(Size const atomno) constcore::chemical::ResidueType
abase2_indices_core::chemical::ResidueTypeprivate
accpt_pos() constcore::chemical::ResidueTypeinline
accpt_pos_core::chemical::ResidueTypeprivate
accpt_pos_sc() constcore::chemical::ResidueTypeinline
accpt_pos_sc_core::chemical::ResidueTypeprivate
actcoord_atoms() constcore::chemical::ResidueTypeinline
actcoord_atoms_indices_core::chemical::ResidueTypeprivate
add_adduct(Adduct &adduct_in)core::chemical::ResidueTypeBaseinline
add_numeric_property(std::string const &tag, core::Real value)core::chemical::ResidueTypeBase
add_property(std::string const &property)core::chemical::ResidueTypeBase
add_property(core::chemical::ResidueProperty const property)core::chemical::ResidueTypeBase
add_string_property(std::string const &tag, std::string value)core::chemical::ResidueTypeBase
add_variant_type(VariantType const variant_type)core::chemical::ResidueTypeBase
add_variant_type(std::string const &variant_type)core::chemical::ResidueTypeBase
all_bb_atoms() constcore::chemical::ResidueTypeinline
all_bb_atoms_core::chemical::ResidueTypeprivate
all_sc_atoms() constcore::chemical::ResidueTypeinline
all_sc_atoms_core::chemical::ResidueTypeprivate
atom_2_residue_connection_map_core::chemical::ResidueTypeprivate
atom_alias(std::string const &name) constcore::chemical::ResidueTypeBaseinline
atom_aliases() constcore::chemical::ResidueTypeBaseinline
atom_aliases()core::chemical::ResidueTypeBaseinlineprotected
atom_aliases_core::chemical::ResidueTypeBaseprivate
atom_base(Size const atomno) constcore::chemical::ResidueType
atom_base_indices_core::chemical::ResidueTypeprivate
atom_being_shadowed(Size atom_shadowing) constcore::chemical::ResidueTypeinline
atom_charge(Size const atomno) constcore::chemical::ResidueTypeinline
atom_depends_on_connection(core::Size const atom_index, core::Size const connection_id) constcore::chemical::ResidueType
atom_depends_on_connection_core::chemical::ResidueTypeprivate
atom_depends_on_lower_polymeric_connection(core::Size const atom_index) constcore::chemical::ResidueType
atom_depends_on_lower_polymeric_connection_core::chemical::ResidueTypeprivate
atom_depends_on_polymeric_connection(core::Size const atom_index) constcore::chemical::ResidueType
atom_depends_on_upper_polymeric_connection(core::Size const atom_index) constcore::chemical::ResidueType
atom_depends_on_upper_polymeric_connection_core::chemical::ResidueTypeprivate
atom_forms_residue_connection(Size const atomid) constcore::chemical::ResidueTypeinline
atom_has_property(Size const atomno, AtomProperty const property) constcore::chemical::ResidueType
atom_index(std::string const &atom_name) constcore::chemical::ResidueTypeinline
atom_is_aro_hydrogen(Size atomno) constcore::chemical::ResidueTypeinline
atom_is_backbone(Size const atomno) constcore::chemical::ResidueTypeinline
atom_is_hydrogen(Size const atomno) constcore::chemical::ResidueTypeinline
atom_is_polar_hydrogen(Size atomno) constcore::chemical::ResidueTypeinline
atom_is_sidechain(Size const atomno) constcore::chemical::ResidueTypeinline
atom_name(Size const atomno) constcore::chemical::ResidueTypeinline
atom_name_to_index_core::chemical::ResidueTypeprivate
atom_names_core::chemical::ResidueTypeprivate
atom_properties(Size const atomno) constcore::chemical::ResidueTypeinline
atom_shadowed_indices_core::chemical::ResidueTypeprivate
atom_type(Size const atomno) constcore::chemical::ResidueTypeinline
atom_type_index(core::Size atomno) constcore::chemical::ResidueTypeinline
atom_type_set() constcore::chemical::ResidueTypeBaseinline
atom_type_set(AtomTypeSetCOP setting)core::chemical::ResidueTypeBaseprotected
atom_type_set_ptr() constcore::chemical::ResidueTypeBaseinline
atom_types_core::chemical::ResidueTypeBaseprivate
atomic_properties_core::chemical::ResidueTypeprivate
atoms_are_bonded(core::Size const atomindex1, core::Size const atomindex2) constcore::chemical::ResidueType
atoms_last_controlled_by_chi() constcore::chemical::ResidueTypeinline
atoms_last_controlled_by_chi(Size chi) constcore::chemical::ResidueTypeinline
atoms_last_controlled_by_chi_core::chemical::ResidueTypeprivate
atoms_with_orb_index() constcore::chemical::ResidueTypeinline
atoms_with_orb_index_core::chemical::ResidueTypeprivate
atoms_within_one_bond_of_a_residue_connection(Size resconn) constcore::chemical::ResidueTypeinline
atoms_within_one_bond_of_a_residue_connection_core::chemical::ResidueTypeprivate
atoms_within_two_bonds_of_a_residue_connection(Size resconn) constcore::chemical::ResidueTypeinline
atoms_within_two_bonds_of_a_residue_connection_core::chemical::ResidueTypeprivate
attach_destruction_obs(MemFn fn, Ptr ptr) constcore::chemical::ResidueTypeinline
attached_H_begin() constcore::chemical::ResidueTypeinline
attached_H_begin(Size const atom) constcore::chemical::ResidueTypeinline
attached_H_begin_core::chemical::ResidueTypeprivate
attached_H_end() constcore::chemical::ResidueTypeinline
attached_H_end(Size const atom) constcore::chemical::ResidueTypeinline
attached_H_end_core::chemical::ResidueTypeprivate
auto_assign_nu_atoms()core::chemical::ResidueTypeprivate
backbone_aa(std::string const &type)core::chemical::ResidueTypeBaseinline
backbone_aa(core::chemical::AA const type)core::chemical::ResidueTypeBaseinline
backbone_aa() constcore::chemical::ResidueTypeBaseinline
backbone_aa_core::chemical::ResidueTypeBaseprivate
backbone_aa_raw() constcore::chemical::ResidueTypeBaseinlineprotected
base_analogue(std::string const &type)core::chemical::ResidueTypeBaseinline
base_analogue() constcore::chemical::ResidueTypeBaseinline
base_analogue_core::chemical::ResidueTypeBaseprivate
base_analogue_raw() constcore::chemical::ResidueTypeBaseinlineprotected
base_name() constcore::chemical::ResidueTypeBaseinline
base_name(std::string const &base_name_in)core::chemical::ResidueTypeBaseinline
base_name_core::chemical::ResidueTypeBaseprivate
base_type_cop_core::chemical::ResidueTypeprivate
bond_ringness(core::Size const atomindex1, core::Size const atomindex2) constcore::chemical::ResidueType
bond_type(core::Size const atomindex1, core::Size const atomindex2) constcore::chemical::ResidueType
bondangle(Size const bondang) constcore::chemical::ResidueTypeinline
bondangle_atom_sets_core::chemical::ResidueTypeprivate
bondangles_for_atom(Size atomno) constcore::chemical::ResidueTypeinline
bondangles_for_atom_core::chemical::ResidueTypeprivate
bonded_neighbor(Size const atomno) constcore::chemical::ResidueType
bonded_neighbor_core::chemical::ResidueTypeprivate
bonded_neighbor_ringness_core::chemical::ResidueTypeprivate
bonded_neighbor_ringnesses(Size const atomno) constcore::chemical::ResidueType
bonded_neighbor_type_core::chemical::ResidueTypeprivate
bonded_neighbor_types(Size const atomno) constcore::chemical::ResidueType
bonded_orbitals(Size const atomno) constcore::chemical::ResidueTypeinline
bonded_orbitals_core::chemical::ResidueTypeprivate
bonds() constcore::chemical::ResidueType
branch_connect_atom_names() constcore::chemical::ResidueType
branch_connect_atoms() constcore::chemical::ResidueType
canonical_atom_alias(std::string const &name) constcore::chemical::ResidueTypeBaseinline
canonical_atom_aliases() constcore::chemical::ResidueTypeBaseinline
canonical_atom_aliases()core::chemical::ResidueTypeBaseinlineprotected
canonical_atom_aliases_core::chemical::ResidueTypeBaseprivate
carbohydrate_info() constcore::chemical::ResidueType
carbohydrate_info_core::chemical::ResidueTypeprivate
chi_2_proton_chi(Size chi_index) constcore::chemical::ResidueTypeinline
chi_2_proton_chi_core::chemical::ResidueTypeprivate
chi_atoms(Size const chino) constcore::chemical::ResidueTypeinline
chi_atoms() constcore::chemical::ResidueTypeinline
chi_atoms_core::chemical::ResidueTypeprivate
chi_rotamers(Size const chino) constcore::chemical::ResidueTypeinline
chi_rotamers_core::chemical::ResidueTypeprivate
clone() const =deletecore::chemical::ResidueTypeprivate
copy_atom_info(MutableResidueType const &source, utility::vector1< core::Size > const &old_to_new)core::chemical::ResidueTypeprivate
copy_other_info(MutableResidueType const &source, utility::vector1< core::Size > const &old_to_new)core::chemical::ResidueTypeprivate
custom_variant_types() constcore::chemical::ResidueTypeBase
cut_bond_neighbor(Size const atomno) constcore::chemical::ResidueTypeinline
cut_bond_neighbor_indices_core::chemical::ResidueTypeprivate
debug_dump_icoor() constcore::chemical::ResidueType
define_mainchain_atoms()core::chemical::ResidueTypeprivate
defined_adducts() constcore::chemical::ResidueTypeBaseinline
defined_adducts_core::chemical::ResidueTypeBaseprivate
defines_custom_rama_prepro_map(bool const pre_proline_position) constcore::chemical::ResidueTypeBase
delete_property(std::string const &property)core::chemical::ResidueTypeBase
delete_property(core::chemical::ResidueProperty const property)core::chemical::ResidueTypeBase
destruction_obs_hub_core::chemical::ResidueTypemutableprivate
detach_destruction_obs(MemFn fn, Ptr ptr) constcore::chemical::ResidueTypeinline
dihedral(Size const dihe) constcore::chemical::ResidueTypeinline
dihedral_atom_sets_core::chemical::ResidueTypeprivate
dihedrals_for_atom(Size atomno) constcore::chemical::ResidueTypeinline
dihedrals_for_atom_core::chemical::ResidueTypeprivate
disulfide_atom_name_core::chemical::ResidueTypeBaseprivate
element(core::Size atomno) constcore::chemical::ResidueType
element_set() constcore::chemical::ResidueTypeBaseinline
element_set_ptr() constcore::chemical::ResidueTypeBaseinline
element_type(core::Size atomno) constcore::chemical::ResidueTypeinline
elements_core::chemical::ResidueTypeprivate
enable_custom_variant_types()core::chemical::ResidueTypeBase
first_sidechain_atom() constcore::chemical::ResidueTypeinline
first_sidechain_hydrogen() constcore::chemical::ResidueTypeinline
first_sidechain_hydrogen_core::chemical::ResidueTypeprivate
force_nbr_atom_orient() constcore::chemical::ResidueTypeBaseinline
force_nbr_atom_orient(bool force_orient)core::chemical::ResidueTypeBaseinline
force_nbr_atom_orient_core::chemical::ResidueTypeBaseprivate
formal_charge(Size const atomno) constcore::chemical::ResidueTypeinline
formal_charge_core::chemical::ResidueTypeprivate
gasteiger_atom_type(core::Size atomno) constcore::chemical::ResidueType
gasteiger_atom_type_index_core::chemical::ResidueTypeprivate
gasteiger_atom_types_core::chemical::ResidueTypeBaseprivate
gasteiger_atom_typeset() constcore::chemical::ResidueTypeBase
get_base_type_cop() const overridecore::chemical::ResidueTypevirtual
get_disulfide_atom_name() constcore::chemical::ResidueTypeBaseinline
get_metal_binding_atoms(AtomIndices &metal_binding_indices) constcore::chemical::ResidueTypeinline
get_metal_binding_atoms() constcore::chemical::ResidueTypeinline
core::chemical::ResidueTypeBase::get_metal_binding_atoms() constcore::chemical::ResidueTypeBaseinline
get_numeric_property(std::string const &tag) constcore::chemical::ResidueTypeBase
get_orbitals()core::chemical::ResidueTypeBaseinlineprotected
get_orbitals_index()core::chemical::ResidueTypeBaseinlineprotected
get_rama_prepro_mainchain_torsion_potential_name(bool const pre_proline_position) constcore::chemical::ResidueTypeBase
get_rama_prepro_map_file_name(bool const pre_proline_position) constcore::chemical::ResidueTypeBase
get_self_ptr() constcore::chemical::ResidueTypeinline
get_self_ptr()core::chemical::ResidueTypeinline
get_self_weak_ptr() constcore::chemical::ResidueTypeinline
get_self_weak_ptr()core::chemical::ResidueTypeinline
get_string_property(std::string const &tag) constcore::chemical::ResidueTypeBase
Haro_index() constcore::chemical::ResidueTypeinline
Haro_index_core::chemical::ResidueTypeprivate
has(std::string const &atom_name) const overridecore::chemical::ResidueTypeinlinevirtual
has_orbital(std::string const &orbital_name) constcore::chemical::ResidueTypeBaseinline
has_orbital_types() constcore::chemical::ResidueTypeBaseinline
has_polymer_dependent_groups() constcore::chemical::ResidueTypeinline
has_polymer_dependent_groups_core::chemical::ResidueTypeprivate
has_property(std::string const &property) constcore::chemical::ResidueTypeBase
has_property(ResidueProperty const property) constcore::chemical::ResidueTypeBase
has_sc_orbitals() constcore::chemical::ResidueType
has_shadow_atoms() constcore::chemical::ResidueTypeinline
has_variant_type(VariantType const variant_type) constcore::chemical::ResidueTypeBase
has_variant_type(std::string const &variant_type) constcore::chemical::ResidueTypeBase
heavyatom_has_polar_hydrogens(Size atomno) constcore::chemical::ResidueType
heavyatom_has_polar_hydrogens_core::chemical::ResidueTypeprivate
heavyatom_is_an_acceptor(Size atomno) constcore::chemical::ResidueTypeinline
Hpol_index() constcore::chemical::ResidueTypeinline
Hpol_index_core::chemical::ResidueTypeprivate
Hpos_apolar() constcore::chemical::ResidueTypeinline
Hpos_apolar_core::chemical::ResidueTypeprivate
Hpos_polar() constcore::chemical::ResidueTypeinline
Hpos_polar_core::chemical::ResidueTypeprivate
Hpos_polar_sc() constcore::chemical::ResidueTypeinline
Hpos_polar_sc_core::chemical::ResidueTypeprivate
icoor(Size const atm) constcore::chemical::ResidueType
icoor_core::chemical::ResidueTypeprivate
ideal_xyz(Size const atomno) constcore::chemical::ResidueTypeinline
ideal_xyz(std::string const &atomname) constcore::chemical::ResidueTypeinline
ideal_xyz_core::chemical::ResidueTypeprivate
initialize_derived_data()core::chemical::ResidueTypeprivate
interchangeability_group() constcore::chemical::ResidueTypeBaseinline
interchangeability_group(std::string const &setting)core::chemical::ResidueTypeBaseinline
interchangeability_group_core::chemical::ResidueTypeBaseprivate
is_acetylated_nterminus() constcore::chemical::ResidueType
is_achiral_backbone() constcore::chemical::ResidueTypeBaseinline
is_achiral_sidechain() constcore::chemical::ResidueTypeBaseinline
is_adduct() constcore::chemical::ResidueType
is_alpha_aa() constcore::chemical::ResidueTypeinline
is_aramid() constcore::chemical::ResidueTypeinline
is_aromatic() constcore::chemical::ResidueType
is_base_type() const overridecore::chemical::ResidueTypevirtual
is_beta_aa() constcore::chemical::ResidueTypeinline
is_branch_point() constcore::chemical::ResidueType
is_canonical() constcore::chemical::ResidueType
is_canonical_aa() constcore::chemical::ResidueType
is_canonical_nucleic() constcore::chemical::ResidueType
is_carbohydrate() constcore::chemical::ResidueType
is_charged() constcore::chemical::ResidueType
is_coarse() constcore::chemical::ResidueType
is_cyclic() constcore::chemical::ResidueType
is_d_aa() constcore::chemical::ResidueTypeBaseinline
is_d_rna() constcore::chemical::ResidueTypeBaseinline
is_disulfide_bonded() constcore::chemical::ResidueTypeinline
is_DNA() constcore::chemical::ResidueTypeBaseinline
is_gamma_aa() constcore::chemical::ResidueTypeinline
is_inverted_virtual_residue() constcore::chemical::ResidueType
is_l_aa() constcore::chemical::ResidueTypeBaseinline
is_l_rna() constcore::chemical::ResidueTypeBaseinline
is_ligand() constcore::chemical::ResidueType
is_lipid() constcore::chemical::ResidueType
is_lower_terminus() constcore::chemical::ResidueType
is_membrane() constcore::chemical::ResidueType
is_meta_aramid() constcore::chemical::ResidueTypeinline
is_metal() constcore::chemical::ResidueType
is_metalbinding() constcore::chemical::ResidueType
is_metapatched() constcore::chemical::ResidueTypeBaseinline
is_metapatched_core::chemical::ResidueTypeBaseprivate
is_methylated_cterminus() constcore::chemical::ResidueType
is_mirrored_type() constcore::chemical::ResidueTypeinline
is_n_methylated() constcore::chemical::ResidueTypeinline
is_N_substituted() constcore::chemical::ResidueType
is_NA() constcore::chemical::ResidueTypeinline
is_oligourea() constcore::chemical::ResidueTypeinline
is_ortho_aramid() constcore::chemical::ResidueTypeinline
is_para_aramid() constcore::chemical::ResidueTypeinline
is_peptoid() constcore::chemical::ResidueTypeBaseinline
is_PNA() constcore::chemical::ResidueTypeinline
is_polar() constcore::chemical::ResidueType
is_polymer() constcore::chemical::ResidueTypeBaseinline
is_post_methylene_meta_aramid() constcore::chemical::ResidueTypeinline
is_post_methylene_ortho_aramid() constcore::chemical::ResidueTypeinline
is_post_methylene_para_aramid() constcore::chemical::ResidueTypeinline
is_pre_methylene_meta_aramid() constcore::chemical::ResidueTypeinline
is_pre_methylene_ortho_aramid() constcore::chemical::ResidueTypeinline
is_pre_methylene_para_aramid() constcore::chemical::ResidueTypeinline
is_pre_methylene_post_methylene_meta_aramid() constcore::chemical::ResidueTypeinline
is_pre_methylene_post_methylene_ortho_aramid() constcore::chemical::ResidueTypeinline
is_pre_methylene_post_methylene_para_aramid() constcore::chemical::ResidueTypeinline
is_protein() constcore::chemical::ResidueTypeBaseinline
is_proton_chi(Size const chino) constcore::chemical::ResidueTypeinline
is_proton_chi_core::chemical::ResidueTypeprivate
is_purine() constcore::chemical::ResidueType
is_pyrimidine() constcore::chemical::ResidueType
is_r_peptoid() constcore::chemical::ResidueTypeBaseinline
is_repulsive(Size const atomno) constcore::chemical::ResidueType
is_ring_atom(uint const ring_num, uint const atom_id) constcore::chemical::ResidueType
is_RNA() constcore::chemical::ResidueTypeBaseinline
is_s_peptoid() constcore::chemical::ResidueTypeBaseinline
is_sidechain_amine() constcore::chemical::ResidueTypeinline
is_sidechain_thiol() constcore::chemical::ResidueTypeinline
is_solvent() constcore::chemical::ResidueType
is_sri() constcore::chemical::ResidueType
is_terminus() constcore::chemical::ResidueTypeinline
is_TNA() constcore::chemical::ResidueTypeinline
is_TP3() constcore::chemical::ResidueType
is_triazolemer() constcore::chemical::ResidueType
is_upper_terminus() constcore::chemical::ResidueType
is_virtual(Size const atomno) constcore::chemical::ResidueType
is_virtual_residue() constcore::chemical::ResidueType
is_virtualizable_by_packer() constcore::chemical::ResidueTypeinline
is_VRT1() constcore::chemical::ResidueType
is_water() constcore::chemical::ResidueTypeinline
last_backbone_atom() constcore::chemical::ResidueTypeinline
last_controlling_chi() constcore::chemical::ResidueTypeinline
last_controlling_chi(Size atomno) constcore::chemical::ResidueTypeinline
last_controlling_chi_core::chemical::ResidueTypeprivate
low_ring_conformers() constcore::chemical::ResidueTypeinline
low_ring_conformers_core::chemical::ResidueTypeprivate
lower_connect() constcore::chemical::ResidueType
lower_connect_atom() constcore::chemical::ResidueType
lower_connect_id() constcore::chemical::ResidueTypeinline
lower_connect_id_core::chemical::ResidueTypeprivate
lowest_ring_conformer_core::chemical::ResidueTypeprivate
lowest_ring_conformers() constcore::chemical::ResidueTypeinline
mainchain_atom(Size const mainchain_index) constcore::chemical::ResidueTypeinline
mainchain_atoms() constcore::chemical::ResidueTypeinline
mainchain_atoms_indices_core::chemical::ResidueTypeprivate
mainchain_potentials_match(ResidueTypeBase const &other) constcore::chemical::ResidueTypeBase
make(MutableResidueType const &residue_type)core::chemical::ResidueTypestatic
mass() constcore::chemical::ResidueTypeinline
mass_core::chemical::ResidueTypeprivate
metal_binding_atoms()core::chemical::ResidueTypeBaseinlineprotected
metal_binding_atoms_core::chemical::ResidueTypeBaseprivate
mm_atom_type(Size const atomno) constcore::chemical::ResidueType
mm_atom_type_index(core::Size atomno) constcore::chemical::ResidueTypeinline
mm_atom_type_index_core::chemical::ResidueTypeprivate
mm_atom_types_core::chemical::ResidueTypeBaseprivate
mm_atom_types_ptr() constcore::chemical::ResidueTypeBaseinline
mm_name(core::Size atomno) constcore::chemical::ResidueType
mode() constcore::chemical::ResidueTypeBaseinline
mode_core::chemical::ResidueTypeBaseprivate
n_backbone_heavyatoms_core::chemical::ResidueTypeprivate
n_hbond_acceptors() constcore::chemical::ResidueTypeinline
n_hbond_acceptors_core::chemical::ResidueTypeprivate
n_hbond_donors() constcore::chemical::ResidueTypeinline
n_hbond_donors_core::chemical::ResidueTypeprivate
n_non_polymeric_residue_connections() constcore::chemical::ResidueTypeinline
n_non_polymeric_residue_connections_core::chemical::ResidueTypeprivate
n_nus() constcore::chemical::ResidueTypeinline
n_orbitals() constcore::chemical::ResidueTypeBase
n_polymeric_residue_connections() constcore::chemical::ResidueTypeinline
n_polymeric_residue_connections_core::chemical::ResidueTypeprivate
n_possible_residue_connections() constcore::chemical::ResidueType
n_proton_chi() constcore::chemical::ResidueTypeinline
n_residue_connections_for_atom(Size const atomid) constcore::chemical::ResidueTypeinline
n_ring_conformer_sets() constcore::chemical::ResidueType
n_rings() constcore::chemical::ResidueTypeinline
n_virtual_atoms() const overridecore::chemical::ResidueTypevirtual
na_analogue(std::string const &type)core::chemical::ResidueTypeBaseinline
na_analogue() constcore::chemical::ResidueTypeBaseinline
na_analogue_core::chemical::ResidueTypeBaseprivate
na_analogue_raw() constcore::chemical::ResidueTypeBaseinlineprotected
name() constcore::chemical::ResidueTypeBaseinline
name(std::string const &name_in)core::chemical::ResidueTypeBaseinline
name1() constcore::chemical::ResidueTypeBaseinline
name1(char const code)core::chemical::ResidueTypeBaseinline
name1_core::chemical::ResidueTypeBaseprivate
name3() constcore::chemical::ResidueTypeBaseinline
name3(std::string const &name_in)core::chemical::ResidueTypeBaseinline
name3_core::chemical::ResidueTypeBaseprivate
name_core::chemical::ResidueTypeBaseprivate
natoms() const overridecore::chemical::ResidueTypeinlinevirtual
natoms_core::chemical::ResidueTypeprivate
nbonds() const overridecore::chemical::ResidueTypeinlinevirtual
nbonds(Size atom) constcore::chemical::ResidueTypeinline
nbonds_core::chemical::ResidueTypeprivate
nbr_atom() constcore::chemical::ResidueTypeinline
nbr_atom_core::chemical::ResidueTypeprivate
nbr_radius() constcore::chemical::ResidueTypeinline
nbr_radius_core::chemical::ResidueTypeprivate
nbrs(Size const atomno) constcore::chemical::ResidueTypeinline
nchi() constcore::chemical::ResidueTypeinline
ndihe() constcore::chemical::ResidueTypeinline
net_formal_charge() constcore::chemical::ResidueTypeBaseinline
net_formal_charge(signed long int charge_in)core::chemical::ResidueTypeBaseinline
net_formal_charge_core::chemical::ResidueTypeBaseprivate
new_orbital_icoor_data(Size const orbital_index) constcore::chemical::ResidueType
nheavyatoms() const overridecore::chemical::ResidueTypeinlinevirtual
nheavyatoms_core::chemical::ResidueTypeprivate
note_chi_controls_atom(Size chi, Size atomno)core::chemical::ResidueTypeprivate
nu_atoms(core::uint const nu_index) constcore::chemical::ResidueTypeinline
nu_atoms() constcore::chemical::ResidueTypeinline
nu_atoms_core::chemical::ResidueTypeprivate
num_bondangles() constcore::chemical::ResidueTypeinline
number_bonded_heavyatoms(Size const atomno) constcore::chemical::ResidueType
number_bonded_hydrogens(Size const atomno) constcore::chemical::ResidueTypeinline
operator=(ResidueType const &src)=deletecore::chemical::ResidueTypeprivate
core::chemical::ResidueTypeBase::operator=(ResidueTypeBase const &)=defaultcore::chemical::ResidueTypeBaseprotected
orbital(Size const orbital_index) constcore::chemical::ResidueTypeBase
orbital(std::string const &orbital_name) constcore::chemical::ResidueTypeBase
orbital_icoor_data(Size const orbital_index) constcore::chemical::ResidueType
orbital_index(std::string const &name) constcore::chemical::ResidueTypeBase
orbital_type(Size const orbital_index) constcore::chemical::ResidueTypeBase
orbital_types_core::chemical::ResidueTypeBaseprivate
orbital_types_ptr() constcore::chemical::ResidueTypeBaseinline
orbitals_core::chemical::ResidueTypeBaseprivate
orbitals_index_core::chemical::ResidueTypeBaseprivate
partial_charge_core::chemical::ResidueTypeprivate
path_distance(Size at1, Size at2) constcore::chemical::ResidueTypeinline
path_distance(Size atom) constcore::chemical::ResidueTypeinline
path_distance_core::chemical::ResidueTypeprivate
path_distances() constcore::chemical::ResidueTypeinline
perform_checks() constcore::chemical::ResidueTypeprivate
placeholder_clone() const =deletecore::chemical::ResidueTypeprivate
print_bondangles() constcore::chemical::ResidueType
print_pretty_path_distances() constcore::chemical::ResidueType
properties() constcore::chemical::ResidueTypeBaseinline
properties_core::chemical::ResidueTypeBaseprivate
proton_chi_2_chi(Size proton_chi_id) constcore::chemical::ResidueTypeinline
proton_chi_extra_samples(Size proton_chi) constcore::chemical::ResidueTypeinline
proton_chi_extra_samples_core::chemical::ResidueTypeprivate
proton_chi_samples(Size proton_chi) constcore::chemical::ResidueTypeinline
proton_chi_samples_core::chemical::ResidueTypeprivate
proton_chis_core::chemical::ResidueTypeprivate
rama_prepro_mainchain_torsion_potential_name_core::chemical::ResidueTypeBaseprivate
rama_prepro_mainchain_torsion_potential_name_beforeproline_core::chemical::ResidueTypeBaseprivate
rama_prepro_map_file_name_core::chemical::ResidueTypeBaseprivate
rama_prepro_map_file_name_beforeproline_core::chemical::ResidueTypeBaseprivate
remap_pdb_atom_names(bool rename)core::chemical::ResidueTypeBaseinline
remap_pdb_atom_names() constcore::chemical::ResidueTypeBaseinline
remap_pdb_atom_names_core::chemical::ResidueTypeBaseprivate
remove_variant_type(VariantType const variant_type)core::chemical::ResidueTypeBase
remove_variant_type(std::string const &variant_type)core::chemical::ResidueTypeBase
report_adducts() constcore::chemical::ResidueTypeBase
requires_actcoord() constcore::chemical::ResidueType
reset_mainchain_torsion_potential_names()core::chemical::ResidueTypeBase
residue_connect_atom_index(Size const resconn_id) constcore::chemical::ResidueType
residue_connection(Size const i) constcore::chemical::ResidueType
residue_connection_id_for_atom(Size const atomid) constcore::chemical::ResidueTypeinline
residue_connection_is_polymeric(Size const resconn_id) constcore::chemical::ResidueTypeinline
residue_connections_core::chemical::ResidueTypeprivate
residue_connections_for_atom(Size const atomid) constcore::chemical::ResidueTypeinline
ResidueType()core::chemical::ResidueTypeprivate
ResidueType(MutableResidueType const &residue_type)core::chemical::ResidueTypeprivate
ResidueType(ResidueType const &residue_type)=deletecore::chemical::ResidueTypeprivate
ResidueTypeBase()core::chemical::ResidueTypeBaseprotected
ResidueTypeBase(AtomTypeSetCOP atom_types, ElementSetCOP element_types, MMAtomTypeSetCOP mm_atom_types, orbitals::OrbitalTypeSetCOP orbital_types)core::chemical::ResidueTypeBaseprotected
ResidueTypeBase(ResidueTypeBase const &)=defaultcore::chemical::ResidueTypeBaseprotected
ring_atoms(uint const ring_num) constcore::chemical::ResidueTypeinline
ring_atoms() constcore::chemical::ResidueTypeinline
ring_atoms_core::chemical::ResidueTypeprivate
ring_conformer_set(core::uint ring_num) constcore::chemical::ResidueType
ring_conformer_sets_core::chemical::ResidueTypeprivate
ring_saturation_type(uint const ring_num) constcore::chemical::ResidueTypeinline
ring_saturation_types() constcore::chemical::ResidueTypeinline
ring_saturation_types_core::chemical::ResidueTypeprivate
RNA_info() constcore::chemical::ResidueType
rna_info_core::chemical::ResidueTypeprivate
root_atom() constcore::chemical::ResidueTypeinline
root_atom_core::chemical::ResidueTypeprivate
rotamer_library_specification(rotamers::RotamerLibrarySpecificationOP)core::chemical::ResidueTypeBase
rotamer_library_specification() constcore::chemical::ResidueTypeBase
rotamer_library_specification_core::chemical::ResidueTypeBaseprivate
rotamer_library_specification_nonconst()core::chemical::ResidueTypeBase
select_orient_atoms(Size &center, Size &nbr1, Size &nbr2) constcore::chemical::ResidueType
select_orient_atoms() constcore::chemical::ResidueType
select_orient_atoms_standard_logic(Size &center, Size &nbr1, Size &nbr2, bool const ignore_virtuals) constcore::chemical::ResidueType
self_pointer_updates()core::chemical::ResidueTypeprivate
set_adduct_flag(bool adduct_in)core::chemical::ResidueTypeBase
set_disulfide_atom_name(std::string const &n)core::chemical::ResidueTypeBaseinline
set_gasteiger_atom_typeset(gasteiger::GasteigerAtomTypeSetCOP setting)core::chemical::ResidueTypeBase
set_metapatched()core::chemical::ResidueTypeBaseinline
set_orbital_typeset(orbitals::OrbitalTypeSetCOP setting)core::chemical::ResidueTypeBaseinline
set_properties(ResiduePropertiesOP properties)core::chemical::ResidueTypeBase
set_rama_prepro_mainchain_torsion_potential_name(std::string const &name_in, bool const pre_proline_position)core::chemical::ResidueTypeBase
set_rama_prepro_map_file_name(std::string const &filename_in, bool const pre_proline_position)core::chemical::ResidueTypeBase
setup_atom_ordering(MutableResidueType const &source)core::chemical::ResidueTypeprivate
show(std::ostream &output=std::cout, bool output_atomic_details=false) const overridecore::chemical::ResidueTypevirtual
show_all_atom_names(std::ostream &out) const overridecore::chemical::ResidueTypevirtual
strip_rotamer_library_specification()core::chemical::ResidueTypeBase
update_derived_data()core::chemical::ResidueTypeprivate
update_last_controlling_chi()core::chemical::ResidueTypeprivate
update_ncaa_rotamer_library_specification_if_present()core::chemical::ResidueTypeprivate
update_nonpolymer_dependent_groups()core::chemical::ResidueTypeprivate
update_polymer_dependent_groups()core::chemical::ResidueTypeprivate
update_ring_conformer_sets()core::chemical::ResidueTypeprivate
upper_connect() constcore::chemical::ResidueType
upper_connect_atom() constcore::chemical::ResidueType
upper_connect_id() constcore::chemical::ResidueTypeinline
upper_connect_id_core::chemical::ResidueTypeprivate
variant_type_enums() constcore::chemical::ResidueTypeBase
variant_types() constcore::chemical::ResidueTypeBase
vec_atom_type_indexes_core::chemical::ResidueTypeprivate
vec_atom_types_core::chemical::ResidueTypeprivate
within1bonds_sets_for_atom(Size atomid) constcore::chemical::ResidueTypeinline
within1bonds_sets_for_atom_core::chemical::ResidueTypeprivate
within2bonds_sets_for_atom(Size atomid) constcore::chemical::ResidueTypeinline
within2bonds_sets_for_atom_core::chemical::ResidueTypeprivate
~ResidueType() overridecore::chemical::ResidueType
Generated on Thu Sep 11 2025 16:57:46 for Rosetta by doxygen 1.9.1