protocols::cyclic_peptide::CycpepRigidBodyPermutationMover Member List

This is the complete list of members for protocols::cyclic_peptide::CycpepRigidBodyPermutationMover, including all inherited members.

align_cycpep_pose_to_original_pose(core::pose::Pose &cycpep_pose, core::pose::Pose const &pose, utility::vector1< core::Size > const &residue_index_map) const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
apply(core::pose::Pose &pose) override	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	virtual
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	virtual
confirm_is_cyclic_peptide(core::pose::Pose const &pose, utility::vector1< core::Size > const &selected_residues) const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
copy_cycpep_pose_coordinates_to_original_pose(core::pose::Pose const &cycpep_pose, core::pose::Pose &pose, utility::vector1< core::Size > const &selected_residues) const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
create()	protocols::moves::Mover	virtual
current_job_	protocols::moves::Mover	private
current_tag_	protocols::moves::Mover	private
CycpepRigidBodyPermutationMover()	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
fresh_instance() const override	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	virtual
generate_cycpep_pose_copy(core::pose::Pose const &pose, utility::vector1< core::Size > const &selected_residues) const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
generate_residue_index_map(utility::vector1< core::Size > const &selected_residues) const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
info_	protocols::moves::Mover	private
input_pose_	protocols::moves::Mover	private
inversion_random() const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
inversion_random_	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
inversion_setting() const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
inversion_setting_	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
last_status_	protocols::moves::Mover	private
mode_	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_mode() const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
mover_name()	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	static
name()	protocols::moves::Mover	inlinestatic
native_pose_	protocols::moves::Mover	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	virtual
permutation_setting() const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
permutation_setting_	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
perturb_cycpep_pose_orientation(core::pose::Pose &pose) const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
perturb_cycpep_pose_position(core::pose::Pose &pose) const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &citations) const override	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	static
random_orientation_perturbation() const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
random_orientation_perturbation_	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
random_position_offset() const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
random_position_offset_	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
residue_selector() const	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
residue_selector_	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_inversion_random(bool const inversion_random)	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
set_inversion_setting(bool const inversion_setting)	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_mover_mode(std::string const &setting)	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
set_mover_mode(CycpepRigidBodyPermutationMoverMode const setting)	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_permutation_setting(signed long int const offset)	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
set_random_orientation_perturbation(core::Real const perturbation)	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
set_random_position_offset(core::Real const offset)	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
set_residue_selector(core::select::residue_selector::ResidueSelectorCOP selector_in)	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover
set_type(std::string const &setting)	protocols::moves::Mover	inline
show(std::ostream &output=std::cout) const override	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
type_	protocols::moves::Mover	private
~CycpepRigidBodyPermutationMover() override	protocols::cyclic_peptide::CycpepRigidBodyPermutationMover