core::environment::SequenceAnnotation Class Reference

#include <SequenceAnnotation.hh>

Inheritance diagram for core::environment::SequenceAnnotation:

Public Member Functions
	SequenceAnnotation (core::Size length)
	~SequenceAnnotation () override=default
void	add_seq_label (std::string const &, std::vector< core::Size > const &)
void	add_seq_label (std::string const &, utility::vector1< core::Size > const &)
void	add_jump_label (std::string const &, core::Size)
void	rm_seq_label (std::string const &)
void	append_seq (std::string const &label)
	append a single residue with the given label to the end of the Annotation More...
core::Size	resolve_seq (LocalPosition const &) const
utility::vector1< core::Size > const &	resolve_seq (std::string const &label) const
core::Size	resolve_jump (std::string const &label) const
core::Size const &	length () const
core::Size	length (std::string const &label) const
bool	has_seq_label (std::string const &) const

Private Types
typedef utility::vector1< std::map< std::string, core::Size > >	NumMap
typedef std::map< std::string, utility::vector1< core::Size > >	SeqLabelMap
typedef std::map< std::string, core::Size >	JumpLabelMap

Private Member Functions
void	_add_seq_label (std::string const &, utility::vector1< core::Size >)

Private Attributes
core::Size	length_
NumMap	pose_to_local_numbers_
SeqLabelMap	label_to_pose_numbers_
JumpLabelMap	jump_label_to_number_

Member Typedef Documentation

JumpLabelMap

typedef std::map< std::string, core::Size > core::environment::SequenceAnnotation::JumpLabelMap

private

NumMap

typedef utility::vector1< std::map< std::string, core::Size> > core::environment::SequenceAnnotation::NumMap

private

SeqLabelMap

typedef std::map< std::string, utility::vector1< core::Size > > core::environment::SequenceAnnotation::SeqLabelMap

private

Constructor & Destructor Documentation

SequenceAnnotation()

core::environment::SequenceAnnotation::SequenceAnnotation

(

core::Size

length

)

References _add_seq_label(), and length().

~SequenceAnnotation()

core::environment::SequenceAnnotation::~SequenceAnnotation ( )

overridedefault

Member Function Documentation

_add_seq_label()

void core::environment::SequenceAnnotation::_add_seq_label ( std::string const &  , utility::vector1< core::Size >    )

private

References label_to_pose_numbers_, length_, pose_to_local_numbers_, and resolve_seq().

Referenced by add_seq_label(), and SequenceAnnotation().

add_jump_label()

void core::environment::SequenceAnnotation::add_jump_label	(	std::string const &	label,
		core::Size	i
	)

References jump_label_to_number_.

add_seq_label() [1/2]

void core::environment::SequenceAnnotation::add_seq_label	(	std::string const &	label,
		std::vector< core::Size > const &	members
	)

References _add_seq_label().

add_seq_label() [2/2]

void core::environment::SequenceAnnotation::add_seq_label	(	std::string const &	,
		utility::vector1< core::Size > const &
	)

append_seq()

void core::environment::SequenceAnnotation::append_seq

(

std::string const &

label

)

append a single residue with the given label to the end of the Annotation

References label_to_pose_numbers_, length(), and length_.

has_seq_label()

bool core::environment::SequenceAnnotation::has_seq_label

(

std::string const &

label

)

const

References label_to_pose_numbers_.

length() [1/2]

core::Size const& core::environment::SequenceAnnotation::length ( ) const

inline

References length_.

Referenced by append_seq(), and SequenceAnnotation().

length() [2/2]

core::Size core::environment::SequenceAnnotation::length

(

std::string const &

label

)

const

References label_to_pose_numbers_.

resolve_jump()

core::Size core::environment::SequenceAnnotation::resolve_jump

(

std::string const &

label

)

const

References jump_label_to_number_.

resolve_seq() [1/2]

core::Size core::environment::SequenceAnnotation::resolve_seq

(

LocalPosition const &

local

)

const

References core::environment::LocalPosition::label(), label_to_pose_numbers_, and core::environment::LocalPosition::position().

Referenced by _add_seq_label().

resolve_seq() [2/2]

utility::vector1< core::Size > const & core::environment::SequenceAnnotation::resolve_seq

(

std::string const &

label

)

const

References label_to_pose_numbers_.

rm_seq_label()

void core::environment::SequenceAnnotation::rm_seq_label

(

std::string const &

label

)

References label_to_pose_numbers_, length_, and pose_to_local_numbers_.

Member Data Documentation

jump_label_to_number_

JumpLabelMap core::environment::SequenceAnnotation::jump_label_to_number_

private

Referenced by add_jump_label(), and resolve_jump().

label_to_pose_numbers_

SeqLabelMap core::environment::SequenceAnnotation::label_to_pose_numbers_

private

Referenced by _add_seq_label(), append_seq(), has_seq_label(), length(), resolve_seq(), and rm_seq_label().

length_

core::Size core::environment::SequenceAnnotation::length_

private

Referenced by _add_seq_label(), append_seq(), length(), and rm_seq_label().

pose_to_local_numbers_

NumMap core::environment::SequenceAnnotation::pose_to_local_numbers_

private

Referenced by _add_seq_label(), and rm_seq_label().

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The documentation for this class was generated from the following files:

• src/core/environment/SequenceAnnotation.hh
• src/core/environment/SequenceAnnotation.cc