protocols::frag_picker::JCouplingIO Class Reference

#include <JCouplingIO.hh>

Public Member Functions
	JCouplingIO ()
	JCouplingIO (std::string file_name)
void	read (std::string const &)
std::pair< core::Real, core::Real >	get_data (core::Size const res_num, bool &has_data)
utility::vector1< core::Real >	get_parameters ()
core::Size	get_length ()

Private Attributes
utility::vector1< utility::vector1< core::Real > >	data_
core::Real	A_
core::Real	B_
core::Real	C_
core::Real	THETA_
core::Size	sequence_length_

Constructor & Destructor Documentation

JCouplingIO() [1/2]

protocols::frag_picker::JCouplingIO::JCouplingIO ( )

inline

JCouplingIO() [2/2]

protocols::frag_picker::JCouplingIO::JCouplingIO ( std::string  file_name )

inline

References read().

Member Function Documentation

get_data()

std::pair< core::Real, core::Real > protocols::frag_picker::JCouplingIO::get_data	(	core::Size const	res_num,
		bool &	has_data
	)

Referenced by protocols::frag_picker::scores::JCoupling::score().

get_length()

core::Size protocols::frag_picker::JCouplingIO::get_length ( )

inline

References sequence_length_.

Referenced by protocols::frag_picker::scores::JCoupling::JCoupling().

get_parameters()

utility::vector1< core::Real > protocols::frag_picker::JCouplingIO::get_parameters

(

)

Referenced by protocols::frag_picker::scores::JCoupling::JCoupling().

read()

void protocols::frag_picker::JCouplingIO::read

(

std::string const &

file_name

)

References core::pose::motif::a(), protocols::match::upstream::b, protocols::frag_picker::trJCouplingIO(), and protocols::hybridization::val.

Referenced by JCouplingIO().

Member Data Documentation

A_

core::Real protocols::frag_picker::JCouplingIO::A_

private

B_

core::Real protocols::frag_picker::JCouplingIO::B_

private

C_

core::Real protocols::frag_picker::JCouplingIO::C_

private

data_

utility::vector1< utility::vector1< core::Real > > protocols::frag_picker::JCouplingIO::data_

private

sequence_length_

core::Size protocols::frag_picker::JCouplingIO::sequence_length_

private

Referenced by get_length().

THETA_

core::Real protocols::frag_picker::JCouplingIO::THETA_

private

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/JCouplingIO.hh
• src/protocols/frag_picker/JCouplingIO.cc