| add_schema(utility::tag::XMLSchemaComplexTypeGeneratorOP complex_schema) | core::simple_metrics::PerResidueProbabilitiesMetric | static |
| apply(std::string const &out_label, pose::Pose &pose, bool override_existing_data=false) const override | core::simple_metrics::PerResidueProbabilitiesMetric | virtual |
| apply(std::string const &out_label, pose::Pose &pose, bool override_existing_data=false) const=0 | core::simple_metrics::PerResidueProbabilitiesMetric | |
| apply(pose::Pose &pose, std::string const &prefix="", std::string const &suffix="", bool override_existing_data=false) const | core::simple_metrics::PerResidueProbabilitiesMetric | |
| core::simple_metrics::SimpleMetric::apply(pose::Pose &pose, std::string const &prefix="", std::string const &suffix="", bool override_existing_data=false) const | core::simple_metrics::SimpleMetric | |
| AverageProbabilitiesMetric() | core::simple_metrics::metrics::AverageProbabilitiesMetric | |
| AverageProbabilitiesMetric(utility::vector1< core::simple_metrics::SimpleMetricCOP > metrics, utility::vector1< core::Real > weights) | core::simple_metrics::metrics::AverageProbabilitiesMetric | |
| AverageProbabilitiesMetric(AverageProbabilitiesMetric const &src) | core::simple_metrics::metrics::AverageProbabilitiesMetric | |
| cache_prefix_ | core::simple_metrics::metrics::AverageProbabilitiesMetric | private |
| cache_suffix_ | core::simple_metrics::metrics::AverageProbabilitiesMetric | private |
| cached_calculate(pose::Pose const &pose, bool use_cache, std::string const &prefix="", std::string const &suffix="", bool fail_on_missing_cache=true, bool use_ref_pose_for_cache=true) const | core::simple_metrics::PerResidueProbabilitiesMetric | |
| calculate(core::pose::Pose const &pose) const override | core::simple_metrics::metrics::AverageProbabilitiesMetric | virtual |
| clone() const override | core::simple_metrics::metrics::AverageProbabilitiesMetric | virtual |
| complex_type_generator_for_simple_metric(utility::tag::XMLSchemaDefinition &) | core::simple_metrics::SimpleMetric | static |
| compute_average(utility::vector1< std::map< core::Size, std::map< core::chemical::AA, core::Real >>> const &all_values) const | core::simple_metrics::metrics::AverageProbabilitiesMetric | |
| custom_type_ | core::simple_metrics::SimpleMetric | private |
| fail_on_missing_cache_ | core::simple_metrics::metrics::AverageProbabilitiesMetric | private |
| get_custom_type() const | core::simple_metrics::SimpleMetric | |
| get_final_sm_type() const | core::simple_metrics::SimpleMetric | |
| get_metric_names() const override | core::simple_metrics::PerResidueProbabilitiesMetric | virtual |
| get_selector() const | core::simple_metrics::PerResidueProbabilitiesMetric | |
| metric() const override | core::simple_metrics::metrics::AverageProbabilitiesMetric | virtual |
| metrics_ | core::simple_metrics::metrics::AverageProbabilitiesMetric | private |
| name() const override | core::simple_metrics::metrics::AverageProbabilitiesMetric | virtual |
| name_static() | core::simple_metrics::metrics::AverageProbabilitiesMetric | static |
| operator=(PerResidueProbabilitiesMetric const &) | core::simple_metrics::PerResidueProbabilitiesMetric | |
| core::simple_metrics::SimpleMetric::operator=(SimpleMetric const &) | core::simple_metrics::SimpleMetric | |
| output_as_pdb_nums_ | core::simple_metrics::PerResidueProbabilitiesMetric | private |
| output_sequence_profile(std::string const &sequence, std::map< core::Size, std::map< core::chemical::AA, core::Real >> const &logit_map, std::string const &output_filename) | core::simple_metrics::PerResidueProbabilitiesMetric | static |
| parse_base_tag(utility::tag::TagCOP tag) | core::simple_metrics::SimpleMetric | virtual |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | core::simple_metrics::metrics::AverageProbabilitiesMetric | virtual |
| parse_per_residue_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) | core::simple_metrics::PerResidueProbabilitiesMetric | virtual |
| PerResidueProbabilitiesMetric() | core::simple_metrics::PerResidueProbabilitiesMetric | |
| PerResidueProbabilitiesMetric(PerResidueProbabilitiesMetric const &other) | core::simple_metrics::PerResidueProbabilitiesMetric | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &citations) const override | core::simple_metrics::metrics::AverageProbabilitiesMetric | privatevirtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | core::simple_metrics::metrics::AverageProbabilitiesMetric | static |
| selector_ | core::simple_metrics::PerResidueProbabilitiesMetric | private |
| set_custom_type(std::string const &custom_type) | core::simple_metrics::SimpleMetric | |
| set_fail_on_missing_cache(bool fail) | core::simple_metrics::metrics::AverageProbabilitiesMetric | |
| set_metric(utility::vector1< core::simple_metrics::SimpleMetricCOP > metrics, utility::vector1< core::Real > weights) | core::simple_metrics::metrics::AverageProbabilitiesMetric | |
| set_output_as_pdb_nums(bool output_as_pdb_nums) | core::simple_metrics::PerResidueProbabilitiesMetric | |
| set_residue_selector(select::residue_selector::ResidueSelectorCOP selector) | core::simple_metrics::PerResidueProbabilitiesMetric | |
| set_use_cached_data(bool use_cache, std::string const &prefix="", std::string const &suffix="") | core::simple_metrics::metrics::AverageProbabilitiesMetric | |
| simple_metric_type() const | core::simple_metrics::SimpleMetric | inline |
| simple_metric_type_ | core::simple_metrics::SimpleMetric | private |
| SimpleMetric(std::string const &simple_metric_type) | core::simple_metrics::SimpleMetric | |
| SimpleMetric(SimpleMetric const &other) | core::simple_metrics::SimpleMetric | |
| tag_name_ | core::simple_metrics::SimpleMetric | private |
| use_cache_ | core::simple_metrics::metrics::AverageProbabilitiesMetric | private |
| weights_ | core::simple_metrics::metrics::AverageProbabilitiesMetric | private |
| write_profile(core::sequence::SequenceProfile &profile, std::string const &output_filename, utility::vector1< core::Size > const &index_to_key) | core::simple_metrics::PerResidueProbabilitiesMetric | privatestatic |
| ~AverageProbabilitiesMetric() override | core::simple_metrics::metrics::AverageProbabilitiesMetric | |
| ~PerResidueProbabilitiesMetric() override | core::simple_metrics::PerResidueProbabilitiesMetric | |
| ~SimpleMetric() override | core::simple_metrics::SimpleMetric | |
