small helper class for the ResidueVicinityRCG More...

#include <ResidueVicinityRCG.hh>

Inheritance diagram for protocols::forge::remodel::ResidueVicinityInfo:

Public Member Functions
	ResidueVicinityInfo (core::Size old_seqpos, utility::vector1< core::Size > const &residue_atoms, utility::vector1< core::Size > const &loopres_atoms, core::Size desired_remodelres_in_vicinity)

	~ResidueVicinityInfo () override

core::Size	old_seqpos () const

utility::vector1< core::Size > const &	residue_atoms () const

utility::vector1< core::Size > const &	residue_base_atoms () const

utility::vector1< core::Size > const &	residue_base2_atoms () const

utility::vector1< core::Size > const &	loopres_atoms () const

utility::vector1< core::Size > const &	loopres_base_atoms () const

utility::vector1< core::Size > const &	loopres_base2_atoms () const

void	set_residue_base_atoms (utility::vector1< core::Size > const &residue_base_atoms)

void	set_residue_base2_atoms (utility::vector1< core::Size > const &residue_base2_atoms)

void	set_loopres_base_atoms (utility::vector1< core::Size > const &loopres_base_atoms)

void	set_loopres_base2_atoms (utility::vector1< core::Size > const &loopres_base2_atoms)

core::Size	desired_remodelres_in_vicinity () const

core::scoring::func::FuncOP	dis () const

core::scoring::func::FuncOP	loop_ang () const

core::scoring::func::FuncOP	targ_ang () const

core::scoring::func::FuncOP	loop_dih () const

core::scoring::func::FuncOP	targ_dih () const

core::scoring::func::FuncOP	lt_dih () const

void	set_dis (core::scoring::func::FuncOP dis)

void	set_loop_ang (core::scoring::func::FuncOP loop_ang)

void	set_targ_ang (core::scoring::func::FuncOP targ_ang)

void	set_loop_dih (core::scoring::func::FuncOP loop_dih)

void	set_targ_dih (core::scoring::func::FuncOP targ_dih)

void	set_lt_dih (core::scoring::func::FuncOP lt_dih)

Private Attributes
core::Size	old_seqpos_

utility::vector1< core::Size >	residue_atoms_

utility::vector1< core::Size >	residue_base_atoms_

utility::vector1< core::Size >	residue_base2_atoms_

utility::vector1< core::Size >	loopres_atoms_

utility::vector1< core::Size >	loopres_base_atoms_

utility::vector1< core::Size >	loopres_base2_atoms_

core::scoring::func::FuncOP	dis_

core::scoring::func::FuncOP	loop_ang_

core::scoring::func::FuncOP	targ_ang_

core::scoring::func::FuncOP	loop_dih_

core::scoring::func::FuncOP	targ_dih_

core::scoring::func::FuncOP	lt_dih_

core::Size	desired_remodelres_in_vicinity_

Detailed Description

small helper class for the ResidueVicinityRCG

Constructor & Destructor Documentation

◆ ResidueVicinityInfo()

protocols::forge::remodel::ResidueVicinityInfo::ResidueVicinityInfo	(	core::Size	old_seqpos,
		utility::vector1< core::Size > const &	residue_atoms,
		utility::vector1< core::Size > const &	loopres_atoms,
		core::Size	desired_remodelres_in_vicinity
	)

◆ ~ResidueVicinityInfo()

protocols::forge::remodel::ResidueVicinityInfo::~ResidueVicinityInfo ( )

overridedefault

Member Function Documentation

◆ desired_remodelres_in_vicinity()

core::Size protocols::forge::remodel::ResidueVicinityInfo::desired_remodelres_in_vicinity ( ) const

inline

◆ dis()

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::dis ( ) const

References dis_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_dis().

◆ loop_ang()

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::loop_ang ( ) const

References loop_ang_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_loop_ang().

◆ loop_dih()

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::loop_dih ( ) const

References loop_dih_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_loop_dih().

◆ loopres_atoms()

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::loopres_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

◆ loopres_base2_atoms()

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::loopres_base2_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

◆ loopres_base_atoms()

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::loopres_base_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

◆ lt_dih()

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::lt_dih ( ) const

References lt_dih_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_lt_dih().

◆ old_seqpos()

core::Size protocols::forge::remodel::ResidueVicinityInfo::old_seqpos ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

◆ residue_atoms()

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::residue_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

◆ residue_base2_atoms()

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::residue_base2_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

◆ residue_base_atoms()

utility::vector1< core::Size > const& protocols::forge::remodel::ResidueVicinityInfo::residue_base_atoms ( ) const

inline

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair().

◆ set_dis()

void protocols::forge::remodel::ResidueVicinityInfo::set_dis ( core::scoring::func::FuncOP dis )

References dis(), and dis_.

◆ set_loop_ang()

void protocols::forge::remodel::ResidueVicinityInfo::set_loop_ang ( core::scoring::func::FuncOP loop_ang )

References loop_ang(), and loop_ang_.

◆ set_loop_dih()

void protocols::forge::remodel::ResidueVicinityInfo::set_loop_dih ( core::scoring::func::FuncOP loop_dih )

References loop_dih(), and loop_dih_.

◆ set_loopres_base2_atoms()

void protocols::forge::remodel::ResidueVicinityInfo::set_loopres_base2_atoms ( utility::vector1< core::Size > const & loopres_base2_atoms )

inline

◆ set_loopres_base_atoms()

void protocols::forge::remodel::ResidueVicinityInfo::set_loopres_base_atoms ( utility::vector1< core::Size > const & loopres_base_atoms )

inline

◆ set_lt_dih()

void protocols::forge::remodel::ResidueVicinityInfo::set_lt_dih ( core::scoring::func::FuncOP lt_dih )

References lt_dih(), and lt_dih_.

◆ set_residue_base2_atoms()

void protocols::forge::remodel::ResidueVicinityInfo::set_residue_base2_atoms ( utility::vector1< core::Size > const & residue_base2_atoms )

inline

◆ set_residue_base_atoms()

void protocols::forge::remodel::ResidueVicinityInfo::set_residue_base_atoms ( utility::vector1< core::Size > const & residue_base_atoms )

inline

◆ set_targ_ang()

void protocols::forge::remodel::ResidueVicinityInfo::set_targ_ang ( core::scoring::func::FuncOP targ_ang )

References targ_ang(), and targ_ang_.

◆ set_targ_dih()

void protocols::forge::remodel::ResidueVicinityInfo::set_targ_dih ( core::scoring::func::FuncOP targ_dih )

References targ_dih(), and targ_dih_.

◆ targ_ang()

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::targ_ang ( ) const

References targ_ang_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_targ_ang().

◆ targ_dih()

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::targ_dih ( ) const

References targ_dih_.

Referenced by protocols::forge::remodel::ResidueVicinityRCG::generate_remodel_constraints_for_respair(), and set_targ_dih().

Member Data Documentation

◆ desired_remodelres_in_vicinity_

core::Size protocols::forge::remodel::ResidueVicinityInfo::desired_remodelres_in_vicinity_

private

◆ dis_

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::dis_

private

Referenced by dis(), and set_dis().

◆ loop_ang_

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::loop_ang_

private

Referenced by loop_ang(), and set_loop_ang().

◆ loop_dih_

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::loop_dih_

private

Referenced by loop_dih(), and set_loop_dih().

◆ loopres_atoms_

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::loopres_atoms_

private

◆ loopres_base2_atoms_

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::loopres_base2_atoms_

private

◆ loopres_base_atoms_

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::loopres_base_atoms_

private

◆ lt_dih_

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::lt_dih_

private

Referenced by lt_dih(), and set_lt_dih().

◆ old_seqpos_

core::Size protocols::forge::remodel::ResidueVicinityInfo::old_seqpos_

private

◆ residue_atoms_

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::residue_atoms_

private

◆ residue_base2_atoms_

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::residue_base2_atoms_

private

◆ residue_base_atoms_

utility::vector1< core::Size > protocols::forge::remodel::ResidueVicinityInfo::residue_base_atoms_

private

◆ targ_ang_

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::targ_ang_

private

Referenced by set_targ_ang(), and targ_ang().

◆ targ_dih_

core::scoring::func::FuncOP protocols::forge::remodel::ResidueVicinityInfo::targ_dih_

private

Referenced by set_targ_dih(), and targ_dih().

The documentation for this class was generated from the following files:

src/protocols/forge/remodel/ResidueVicinityRCG.hh
src/protocols/forge/remodel/ResidueVicinityRCG.cc

Public Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

◆ ResidueVicinityInfo()

◆ ~ResidueVicinityInfo()

Member Function Documentation

◆ desired_remodelres_in_vicinity()

◆ dis()

◆ loop_ang()

◆ loop_dih()

◆ loopres_atoms()

◆ loopres_base2_atoms()

◆ loopres_base_atoms()

◆ lt_dih()

◆ old_seqpos()

◆ residue_atoms()

◆ residue_base2_atoms()

◆ residue_base_atoms()

◆ set_dis()

◆ set_loop_ang()

◆ set_loop_dih()

◆ set_loopres_base2_atoms()

◆ set_loopres_base_atoms()

◆ set_lt_dih()

◆ set_residue_base2_atoms()

◆ set_residue_base_atoms()

◆ set_targ_ang()

◆ set_targ_dih()

◆ targ_ang()

◆ targ_dih()

Member Data Documentation

◆ desired_remodelres_in_vicinity_

◆ dis_

◆ loop_ang_

◆ loop_dih_

◆ loopres_atoms_

◆ loopres_base2_atoms_

◆ loopres_base_atoms_

◆ lt_dih_

◆ old_seqpos_

◆ residue_atoms_

◆ residue_base2_atoms_

◆ residue_base_atoms_

◆ targ_ang_

◆ targ_dih_