protocols::rotamer_recovery::RRComparerRotBins Class Reference

#include <RRComparer.hh>

Inheritance diagram for protocols::rotamer_recovery::RRComparerRotBins:

Public Member Functions
	RRComparerRotBins ()
	~RRComparerRotBins () override
	RRComparerRotBins (RRComparerRotBins const &)
std::string	get_name () const override
std::string	get_parameters () const override
void	set_recovery_threshold (core::Real const recovery_threshold) override
void	set_absolute_threshold (core::Real const absolute_threshold) override
bool	measure_rotamer_recovery (core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::Real &score, bool &recovered) override
void	parse_attributes_from_tag (utility::tag::TagCOP tag) override
Public Member Functions inherited from protocols::rotamer_recovery::RRComparer
	~RRComparer () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...

Private Attributes
core::Real	recovery_threshold_
core::Real	absolute_threshold_

Constructor & Destructor Documentation

RRComparerRotBins() [1/2]

protocols::rotamer_recovery::RRComparerRotBins::RRComparerRotBins

(

)

~RRComparerRotBins()

protocols::rotamer_recovery::RRComparerRotBins::~RRComparerRotBins ( )

overridedefault

RRComparerRotBins() [2/2]

protocols::rotamer_recovery::RRComparerRotBins::RRComparerRotBins

(

RRComparerRotBins const &

src

)

Member Function Documentation

get_name()

string protocols::rotamer_recovery::RRComparerRotBins::get_name ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

get_parameters()

string protocols::rotamer_recovery::RRComparerRotBins::get_parameters ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

measure_rotamer_recovery()

bool protocols::rotamer_recovery::RRComparerRotBins::measure_rotamer_recovery ( core::pose::Pose const &  pose1, core::pose::Pose const &  pose2, core::conformation::Residue const &  res1, core::conformation::Residue const &  res2, core::Real &  score, bool &  recovered  )

overridevirtual

measure the rotamer recovery by comparing rotamer bins

Returns

true, if the measurement was successful, false otherwise

Implements protocols::rotamer_recovery::RRComparer.

References core::conformation::Residue::aa(), core::chemical::ResidueTypeBase::name(), core::conformation::Residue::name(), core::chemical::num_canonical_aas, recovery_threshold_, core::pack::dunbrack::rotamer_from_chi(), protocols::hybridization::score, protocols::rotamer_recovery::TR(), and core::conformation::Residue::type().

parse_attributes_from_tag()

void protocols::rotamer_recovery::RRComparerRotBins::parse_attributes_from_tag ( utility::tag::TagCOP  tag )

overridevirtual

Reimplemented from protocols::rotamer_recovery::RRComparer.

set_absolute_threshold()

void protocols::rotamer_recovery::RRComparerRotBins::set_absolute_threshold ( core::Real const  absolute_threshold )

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

References absolute_threshold_.

set_recovery_threshold()

void protocols::rotamer_recovery::RRComparerRotBins::set_recovery_threshold ( core::Real const  recovery_threshold )

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

References recovery_threshold_.

Member Data Documentation

absolute_threshold_

core::Real protocols::rotamer_recovery::RRComparerRotBins::absolute_threshold_

private

Referenced by set_absolute_threshold().

recovery_threshold_

core::Real protocols::rotamer_recovery::RRComparerRotBins::recovery_threshold_

private

Referenced by measure_rotamer_recovery(), and set_recovery_threshold().

---

The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RRComparer.hh
• src/protocols/rotamer_recovery/RRComparer.cc