| add_after_chemistry(protocols::chemistries::ChemistryOP chemistry) | protocols::drug_design::DrugDesignMover | |
| add_before_chemistry(protocols::chemistries::ChemistryOP chemistry) | protocols::drug_design::DrugDesignMover | |
| add_chemistry(protocols::chemistries::ChemistryOP chemistry, core::Real weight=1.0) | protocols::drug_design::DrugDesignMover | |
| after_chemistries_ | protocols::drug_design::DrugDesignMover | private |
| apply(core::pose::Pose &pose) override | protocols::drug_design::DrugDesignMover | virtual |
| before_chemistries_ | protocols::drug_design::DrugDesignMover | private |
| chain() const | protocols::drug_design::DrugDesignMover | inline |
| chain(char chain) | protocols::drug_design::DrugDesignMover | inline |
| chain_ | protocols::drug_design::DrugDesignMover | private |
| check_design_position(core::pose::Pose const &pose, core::Size n) | protocols::drug_design::DrugDesignMover | |
| chemistries() | protocols::drug_design::DrugDesignMover | inlineprotected |
| chemistries_ | protocols::drug_design::DrugDesignMover | private |
| chemistry_from_subtag(utility::tag::TagCOP const subtag, basic::datacache::DataMap &data) const | protocols::drug_design::DrugDesignMover | protected |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::drug_design::DrugDesignMover | virtual |
| compute_scores_for_logfile(core::Real score, core::chemical::MutableResidueTypeOP restype, core::Real &raw_score, core::Real &LE_score) const | protocols::drug_design::DrugDesignMover | protected |
| create() | protocols::moves::Mover | virtual |
| current_job_ | protocols::moves::Mover | private |
| current_tag_ | protocols::moves::Mover | private |
| debug_prefix() const | protocols::drug_design::DrugDesignMover | inline |
| debug_prefix(std::string const &setting) | protocols::drug_design::DrugDesignMover | inline |
| debug_prefix_ | protocols::drug_design::DrugDesignMover | private |
| DrugDesignMover() | protocols::drug_design::DrugDesignMover | |
| dump_molecule(core::chemical::MutableResidueType const &restype, std::string const &stage) const | protocols::drug_design::DrugDesignMover | protected |
| dump_molecule(core::conformation::Residue const &residue, std::string const &stage) const | protocols::drug_design::DrugDesignMover | protected |
| emplace_residue_type(core::pose::Pose &pose, core::chemical::MutableResidueTypeOP restype, core::chemical::IndexVDMapping const &index_VD_mapping) | protocols::drug_design::DrugDesignMover | protected |
| find_design_position(core::pose::Pose const &pose) | protocols::drug_design::DrugDesignMover | |
| find_new_res_name(std::string original_name, core::Size iteration, core::Size subiteration=0) const | protocols::drug_design::DrugDesignMover | protected |
| fresh_instance() const override | protocols::drug_design::DrugDesignMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_jobname() const | protocols::drug_design::DrugDesignMover | protected |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::drug_design::DrugDesignMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| info_ | protocols::moves::Mover | private |
| input_pose_ | protocols::moves::Mover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| last_status_ | protocols::moves::Mover | private |
| lig_efficiency_ | protocols::drug_design::DrugDesignMover | private |
| maxtrials() const | protocols::drug_design::DrugDesignMover | inline |
| maxtrials(core::Size const ntrial) | protocols::drug_design::DrugDesignMover | inline |
| maxtrials_ | protocols::drug_design::DrugDesignMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::drug_design::DrugDesignMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| native_pose_ | protocols::moves::Mover | private |
| output_logfile_ | protocols::drug_design::DrugDesignMover | private |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) override | protocols::drug_design::DrugDesignMover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| post_process_restype(core::chemical::MutableResidueTypeOP restype, core::chemical::IndexVDMapping &index_vd_mapping, std::string const &new_name, core::pose::Pose const &pose) | protocols::drug_design::DrugDesignMover | protected |
| postfilter(protocols::filters::FilterOP const &setting) | protocols::drug_design::DrugDesignMover | |
| postfilter_ | protocols::drug_design::DrugDesignMover | private |
| pre_process_restype(core::chemical::MutableResidueTypeOP restype, core::chemical::IndexVDMapping &index_vd_mapping, core::pose::Pose const &pose) | protocols::drug_design::DrugDesignMover | protected |
| prefilter(protocols::filters::FilterOP const &setting) | protocols::drug_design::DrugDesignMover | |
| prefilter_ | protocols::drug_design::DrugDesignMover | private |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::drug_design::DrugDesignMover | static |
| redocker() const | protocols::drug_design::DrugDesignMover | |
| redocker(protocols::moves::MoverOP const &mover) | protocols::drug_design::DrugDesignMover | |
| redocker_ | protocols::drug_design::DrugDesignMover | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| restypes_ | protocols::drug_design::DrugDesignMover | private |
| restypeset_ | protocols::drug_design::DrugDesignMover | private |
| scorer() const | protocols::drug_design::DrugDesignMover | |
| scorer(protocols::filters::FilterOP const &scorer) | protocols::drug_design::DrugDesignMover | |
| scorer_ | protocols::drug_design::DrugDesignMover | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| simulated_annealing_ | protocols::drug_design::DrugDesignMover | private |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| temperature() const | protocols::drug_design::DrugDesignMover | inline |
| temperature(core::Real const temp) | protocols::drug_design::DrugDesignMover | inline |
| temperature_ | protocols::drug_design::DrugDesignMover | private |
| temperature_params_ | protocols::drug_design::DrugDesignMover | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| type_ | protocols::moves::Mover | private |
| weights_ | protocols::drug_design::DrugDesignMover | private |
| ~DrugDesignMover() override | protocols::drug_design::DrugDesignMover | |
