protocols::helical_bundle_predict::HBPHelixParameters Class Reference

Helical parameters stored by the HBPHelix class. More...

#include <HBPHelixAssignments.hh>

Inheritance diagram for protocols::helical_bundle_predict::HBPHelixParameters:

Public Member Functions
	HBPHelixParameters ()
	Default constructor. More...
	HBPHelixParameters (HBPHelixParameters const &src)
	Copy constructor. More...
	~HBPHelixParameters () override
	Destructor. More...
HBPHelixParametersOP	clone () const
	Create a copy of this object and return an owning pointer to the copy. More...
void	set_r0_min (core::Real const &setting)
	Set minimum r0 value. More...
void	set_r0_max (core::Real const &setting)
	Set maximum r0 value. More...
void	set_omega0_min (core::Real const &setting)
	Set minimum omega0 value. More...
void	set_omega0_max (core::Real const &setting)
	Set maximum omega0 value. More...
void	set_delta_omega1_min (core::Real const &setting)
	Set minimum delta_omega1 value. More...
void	set_delta_omega1_max (core::Real const &setting)
	Set maximum delta_omega1 value. More...
void	set_calculator (protocols::helical_bundle::BundleParametrizationCalculatorCOP const &calculator_in)
	Set the bundle parameterization calculator. More...
void	create_calculator_from_file (std::string const &filename)
	Create a new bundle parameterization calculator, and initialize it from a Crick params file. More...
protocols::helical_bundle::BundleParametrizationCalculatorCOP	bundle_calculator () const
	Access the bundle calculator (const-access). More...
protocols::helical_bundle::BundleParametrizationCalculatorOP	bundle_calculator ()
	Access the bundle calculator (nonconst-access). More...
std::pair< core::Real, core::Real > const &	r0_range () const
	Get the r0 range. More...
std::pair< core::Real, core::Real > const &	omega0_range () const
	Get the omega0 range. More...
std::pair< core::Real, core::Real > const &	delta_omega1_range () const
	Get the delta_omega1 range. More...

Private Attributes
std::pair< core::Real, core::Real >	r0_range_
	The range of r0 values that are allowed. More...
std::pair< core::Real, core::Real >	omega0_range_
	The range of omega0 values that are allowed. More...
std::pair< core::Real, core::Real >	delta_omega1_range_
	The range of delta_omega1 values that are allowed. More...
protocols::helical_bundle::BundleParametrizationCalculatorOP	bundle_calculator_
	Helper object to calculate Crick parameterization. More...

Friends
class	::HBPHelixAssignmentsTests

Detailed Description

Helical parameters stored by the HBPHelix class.

Allows the HBPHelix class to avoid storing these parameters if it needn't.

Author

Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org).

Constructor & Destructor Documentation

HBPHelixParameters() [1/2]

protocols::helical_bundle_predict::HBPHelixParameters::HBPHelixParameters

(

)

Default constructor.

HBPHelixParameters() [2/2]

protocols::helical_bundle_predict::HBPHelixParameters::HBPHelixParameters

(

HBPHelixParameters const &

src

)

Copy constructor.

References bundle_calculator_.

~HBPHelixParameters()

protocols::helical_bundle_predict::HBPHelixParameters::~HBPHelixParameters ( )

override

Destructor.

Member Function Documentation

bundle_calculator() [1/2]

protocols::helical_bundle::BundleParametrizationCalculatorOP protocols::helical_bundle_predict::HBPHelixParameters::bundle_calculator ( )

inline

Access the bundle calculator (nonconst-access).

References bundle_calculator_.

bundle_calculator() [2/2]

protocols::helical_bundle::BundleParametrizationCalculatorCOP protocols::helical_bundle_predict::HBPHelixParameters::bundle_calculator ( ) const

inline

Access the bundle calculator (const-access).

References bundle_calculator_.

clone()

HBPHelixParametersOP protocols::helical_bundle_predict::HBPHelixParameters::clone

(

)

const

Create a copy of this object and return an owning pointer to the copy.

create_calculator_from_file()

void protocols::helical_bundle_predict::HBPHelixParameters::create_calculator_from_file

(

std::string const &

filename

)

Create a new bundle parameterization calculator, and initialize it from a Crick params file.

WARNING! Triggers read from disk!

References bundle_calculator_, and protocols::abinitio::filename().

delta_omega1_range()

std::pair< core::Real, core::Real > const& protocols::helical_bundle_predict::HBPHelixParameters::delta_omega1_range ( ) const

inline

Get the delta_omega1 range.

Settings should be in radians.

References delta_omega1_range_.

omega0_range()

std::pair< core::Real, core::Real > const& protocols::helical_bundle_predict::HBPHelixParameters::omega0_range ( ) const

inline

Get the omega0 range.

Settings should be in radians.

References omega0_range_.

r0_range()

std::pair< core::Real, core::Real > const& protocols::helical_bundle_predict::HBPHelixParameters::r0_range ( ) const

inline

Get the r0 range.

References r0_range_.

set_calculator()

void protocols::helical_bundle_predict::HBPHelixParameters::set_calculator

(

protocols::helical_bundle::BundleParametrizationCalculatorCOP const &

calculator_in

)

Set the bundle parameterization calculator.

Input is cloned.

References bundle_calculator_.

set_delta_omega1_max()

void protocols::helical_bundle_predict::HBPHelixParameters::set_delta_omega1_max

(

core::Real const &

setting

)

Set maximum delta_omega1 value.

Settings should be in radians.

References delta_omega1_range_.

set_delta_omega1_min()

void protocols::helical_bundle_predict::HBPHelixParameters::set_delta_omega1_min

(

core::Real const &

setting

)

Set minimum delta_omega1 value.

Settings should be in radians.

References delta_omega1_range_.

set_omega0_max()

void protocols::helical_bundle_predict::HBPHelixParameters::set_omega0_max

(

core::Real const &

setting

)

Set maximum omega0 value.

Settings should be in radians.

References omega0_range_.

set_omega0_min()

void protocols::helical_bundle_predict::HBPHelixParameters::set_omega0_min

(

core::Real const &

setting

)

Set minimum omega0 value.

Settings should be in radians.

References omega0_range_.

set_r0_max()

void protocols::helical_bundle_predict::HBPHelixParameters::set_r0_max

(

core::Real const &

setting

)

Set maximum r0 value.

References r0_range_.

set_r0_min()

void protocols::helical_bundle_predict::HBPHelixParameters::set_r0_min

(

core::Real const &

setting

)

Set minimum r0 value.

References r0_range_.

Friends And Related Function Documentation

::HBPHelixAssignmentsTests

friend class ::HBPHelixAssignmentsTests

friend

Member Data Documentation

bundle_calculator_

protocols::helical_bundle::BundleParametrizationCalculatorOP protocols::helical_bundle_predict::HBPHelixParameters::bundle_calculator_

private

Helper object to calculate Crick parameterization.

Referenced by bundle_calculator(), create_calculator_from_file(), HBPHelixParameters(), and set_calculator().

delta_omega1_range_

std::pair< core::Real, core::Real > protocols::helical_bundle_predict::HBPHelixParameters::delta_omega1_range_

private

The range of delta_omega1 values that are allowed.

Settings should be in radians.

Referenced by delta_omega1_range(), set_delta_omega1_max(), and set_delta_omega1_min().

omega0_range_

std::pair< core::Real, core::Real > protocols::helical_bundle_predict::HBPHelixParameters::omega0_range_

private

The range of omega0 values that are allowed.

Settings should be in radians.

Referenced by omega0_range(), set_omega0_max(), and set_omega0_min().

r0_range_

std::pair< core::Real, core::Real > protocols::helical_bundle_predict::HBPHelixParameters::r0_range_

private

The range of r0 values that are allowed.

Referenced by r0_range(), set_r0_max(), and set_r0_min().

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The documentation for this class was generated from the following files:

• src/protocols/helical_bundle_predict/HBPHelixAssignments.hh
• src/protocols/helical_bundle_predict/HBPHelixAssignments.cc