ProteinMPNNProbabilitiesMetric.cc File Reference

A metric for predicting amino acid probabilities using ProteinMPNN (Dauparas et al.). More...

#include <protocols/protein_mpnn/ProteinMPNNProbabilitiesMetric.hh>
#include <protocols/protein_mpnn/ProteinMPNNProbabilitiesMetricCreator.hh>
#include <core/simple_metrics/util.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <core/pose/Pose.hh>
#include <protocols/protein_mpnn/ProteinMPNN.hh>
#include <protocols/protein_mpnn/util.hh>
#include <protocols/protein_mpnn/ProteinMPNNMover.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/ResidueLevelTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/symmetry/util.hh>
#include <protocols/moves/mover_schemas.hh>
#include <protocols/simple_moves/SimpleThreadingMover.hh>
#include <basic/citation_manager/UnpublishedModuleInfo.hh>
#include <basic/Tracer.hh>
#include <utility/string_util.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <basic/datacache/DataMap.hh>
#include <utility>
#include <utility/pointer/memory.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::protein_mpnn

Functions
static basic::Tracer	TR ("protocols.protein_mpnn.ProteinMPNNProbabilitiesMetric")

Detailed Description

A metric for predicting amino acid probabilities using ProteinMPNN (Dauparas et al.).

Author

Moritz Ertelt (morit.nosp@m.z.er.nosp@m.telt@.nosp@m.goog.nosp@m.lemai.nosp@m.l.co.nosp@m.m) @modified Jason C. Klima – Added deterministic_flag option

Function Documentation

TR()

static basic::Tracer TR ( "protocols.protein_mpnn.ProteinMPNNProbabilitiesMetric"  )

static