core::environment::FoldTreeSketch::Node Class Reference

#include <FoldTreeSketch.hh>

Inheritance diagram for core::environment::FoldTreeSketch::Node:

Public Types
typedef std::set< NodeCAP, utility::pointer::owner_less< NodeCAP > >	EdgeList

Public Member Functions
void	add_peptide_neighbor (NodeOP n)
void	add_jump_neighbor (NodeAP n)
void	rm_peptide_neighbor (NodeAP n)
void	rm_jump_neighbor (NodeAP n)
bool	has_peptide_neighbor (NodeCAP n) const
bool	has_jump_neighbor (NodeCAP n) const
bool	has_neighbor (NodeCAP n) const
void	collect_jumps (std::set< std::pair< Size, Size > > &v) const
bool	has_cycle (std::stack< NodeCAP > &path, NodeCAP start) const
core::Size	seqid () const
void	unvisit () const
bool	visited () const

Static Public Member Functions
static NodeOP	newNode (core::Size i)

Private Member Functions
	Node (core::Size i)
	NODE IMPLEMENTATION METHODS. More...
void	rm_neighbor (FoldTreeSketch::Node::EdgeList &list, Node *n)

Private Attributes
core::Size	seqid_
NodeAP	pep_prev_
NodeAP	pep_next_
NodeCAP	parent_
EdgeList	jump_neighbors_
NodeAP	this_weak_ptr_

Member Typedef Documentation

EdgeList

typedef std::set< NodeCAP, utility::pointer::owner_less< NodeCAP > > core::environment::FoldTreeSketch::Node::EdgeList

Constructor & Destructor Documentation

Node()

core::environment::FoldTreeSketch::Node::Node ( core::Size  i )

private

NODE IMPLEMENTATION METHODS.

Member Function Documentation

add_jump_neighbor()

void core::environment::FoldTreeSketch::Node::add_jump_neighbor

(

NodeAP

n

)

add_peptide_neighbor()

void core::environment::FoldTreeSketch::Node::add_peptide_neighbor

(

NodeOP

n

)

collect_jumps()

void core::environment::FoldTreeSketch::Node::collect_jumps

(

std::set< std::pair< Size, Size > > &

v

)

const

has_cycle()

bool core::environment::FoldTreeSketch::Node::has_cycle	(	std::stack< NodeCAP > &	path,
		NodeCAP	start
	)		const

References protocols::hybridization::path.

has_jump_neighbor()

bool core::environment::FoldTreeSketch::Node::has_jump_neighbor

(

NodeCAP

n

)

const

has_neighbor()

bool core::environment::FoldTreeSketch::Node::has_neighbor

(

NodeCAP

n

)

const

has_peptide_neighbor()

bool core::environment::FoldTreeSketch::Node::has_peptide_neighbor

(

NodeCAP

n

)

const

newNode()

FoldTreeSketch::NodeOP core::environment::FoldTreeSketch::Node::newNode ( core::Size  i )

static

Referenced by core::environment::FoldTreeSketch::append_peptide().

rm_jump_neighbor()

void core::environment::FoldTreeSketch::Node::rm_jump_neighbor

(

NodeAP

n

)

rm_neighbor()

void core::environment::FoldTreeSketch::Node::rm_neighbor ( FoldTreeSketch::Node::EdgeList &  list, Node *  n  )

private

rm_peptide_neighbor()

void core::environment::FoldTreeSketch::Node::rm_peptide_neighbor

(

NodeAP

n

)

seqid()

Size core::environment::FoldTreeSketch::Node::seqid

(

)

const

unvisit()

void core::environment::FoldTreeSketch::Node::unvisit ( ) const

inline

References parent_.

visited()

bool core::environment::FoldTreeSketch::Node::visited ( ) const

inline

References parent_.

Member Data Documentation

jump_neighbors_

EdgeList core::environment::FoldTreeSketch::Node::jump_neighbors_

private

parent_

NodeCAP core::environment::FoldTreeSketch::Node::parent_

mutableprivate

Referenced by unvisit(), and visited().

pep_next_

NodeAP core::environment::FoldTreeSketch::Node::pep_next_

private

pep_prev_

NodeAP core::environment::FoldTreeSketch::Node::pep_prev_

private

seqid_

core::Size core::environment::FoldTreeSketch::Node::seqid_

private

this_weak_ptr_

NodeAP core::environment::FoldTreeSketch::Node::this_weak_ptr_

private

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The documentation for this class was generated from the following files:

• src/core/environment/FoldTreeSketch.hh
• src/core/environment/FoldTreeSketch.cc