core::import_pose::options::RNA_BasicOptions Class Reference

#include <RNA_BasicOptions.hh>

Inheritance diagram for core::import_pose::options::RNA_BasicOptions:

Public Member Functions
	RNA_BasicOptions ()
RNA_BasicOptionsOP	clone () const
	clone the options More...
void	initialize_from_command_line ()
void	initialize_from_options (utility::options::OptionCollection const &opts)
void	initialize_from_tag (utility::tag::TagCOP const &tag)
virtual void	parse_my_tag (utility::tag::TagCOP)
	Initialize from the recursive "tag" structure. More...
virtual std::string	type () const
	The class name (its type) for a particular ResourceOptions instance. This function allows for better error message delivery. More...
void	set_dump_pdb (bool const setting)
bool	dump_pdb () const
void	set_move_first_rigid_body (bool const &setting)
bool	move_first_rigid_body () const
void	set_dock_into_density (bool const &setting)
bool	dock_into_density () const
void	set_model_with_density (bool const &setting)
bool	model_with_density () const
void	set_verbose (bool const &setting)
bool	verbose () const

Static Public Member Functions
static void	list_attributes (utility::tag::AttributeList &attlist)
static void	list_options_read (utility::options::OptionKeyList &opts)

Private Attributes
bool	dump_pdb_
bool	move_first_rigid_body_
bool	dock_into_density_
bool	model_with_density_
bool	verbose_

Constructor & Destructor Documentation

RNA_BasicOptions()

core::import_pose::options::RNA_BasicOptions::RNA_BasicOptions

(

)

Member Function Documentation

clone()

RNA_BasicOptionsOP core::import_pose::options::RNA_BasicOptions::clone

(

)

const

clone the options

dock_into_density()

bool core::import_pose::options::RNA_BasicOptions::dock_into_density ( ) const

inline

References dock_into_density_.

dump_pdb()

bool core::import_pose::options::RNA_BasicOptions::dump_pdb ( ) const

inline

References dump_pdb_.

initialize_from_command_line()

void core::import_pose::options::RNA_BasicOptions::initialize_from_command_line

(

)

References initialize_from_options().

initialize_from_options()

void core::import_pose::options::RNA_BasicOptions::initialize_from_options

(

utility::options::OptionCollection const &

opts

)

References set_dock_into_density(), set_dump_pdb(), set_model_with_density(), and set_move_first_rigid_body().

Referenced by initialize_from_command_line(), core::import_pose::options::RNA_MinimizerOptions::initialize_from_command_line(), and core::import_pose::options::RNA_MinimizerOptions::initialize_from_options().

initialize_from_tag()

void core::import_pose::options::RNA_BasicOptions::initialize_from_tag

(

utility::tag::TagCOP const &

tag

)

References dock_into_density_, move_first_rigid_body_, set_dock_into_density(), set_dump_pdb(), set_model_with_density(), and set_move_first_rigid_body().

Referenced by core::import_pose::options::RNA_MinimizerOptions::initialize_from_tag().

list_attributes()

void core::import_pose::options::RNA_BasicOptions::list_attributes ( utility::tag::AttributeList &  attlist )

static

Referenced by core::import_pose::options::RNA_MinimizerOptions::list_attributes().

list_options_read()

void core::import_pose::options::RNA_BasicOptions::list_options_read ( utility::options::OptionKeyList &  opts )

static

Referenced by core::import_pose::options::RNA_MinimizerOptions::list_options_read().

model_with_density()

bool core::import_pose::options::RNA_BasicOptions::model_with_density ( ) const

inline

References model_with_density_.

move_first_rigid_body()

bool core::import_pose::options::RNA_BasicOptions::move_first_rigid_body ( ) const

inline

References move_first_rigid_body_.

parse_my_tag()

virtual void core::import_pose::options::RNA_BasicOptions::parse_my_tag ( utility::tag::TagCOP  )

inlinevirtual

Initialize from the recursive "tag" structure.

Reimplemented in core::import_pose::options::RNA_MinimizerOptions, core::import_pose::options::RNA_FragmentMonteCarloOptions, and core::import_pose::options::RNA_DeNovoProtocolOptions.

set_dock_into_density()

void core::import_pose::options::RNA_BasicOptions::set_dock_into_density ( bool const &  setting )

inline

References dock_into_density_.

Referenced by initialize_from_options(), and initialize_from_tag().

set_dump_pdb()

void core::import_pose::options::RNA_BasicOptions::set_dump_pdb ( bool const  setting )

inline

References dump_pdb_.

Referenced by initialize_from_options(), and initialize_from_tag().

set_model_with_density()

void core::import_pose::options::RNA_BasicOptions::set_model_with_density ( bool const &  setting )

inline

References model_with_density_.

Referenced by initialize_from_options(), and initialize_from_tag().

set_move_first_rigid_body()

void core::import_pose::options::RNA_BasicOptions::set_move_first_rigid_body ( bool const &  setting )

inline

References move_first_rigid_body_.

Referenced by initialize_from_options(), and initialize_from_tag().

set_verbose()

void core::import_pose::options::RNA_BasicOptions::set_verbose ( bool const &  setting )

inline

References verbose_.

type()

virtual std::string core::import_pose::options::RNA_BasicOptions::type ( ) const

inlinevirtual

The class name (its type) for a particular ResourceOptions instance. This function allows for better error message delivery.

Reimplemented in core::import_pose::options::RNA_MinimizerOptions, core::import_pose::options::RNA_FragmentMonteCarloOptions, and core::import_pose::options::RNA_DeNovoProtocolOptions.

verbose()

bool core::import_pose::options::RNA_BasicOptions::verbose ( ) const

inline

References verbose_.

Member Data Documentation

dock_into_density_

bool core::import_pose::options::RNA_BasicOptions::dock_into_density_

private

Referenced by dock_into_density(), initialize_from_tag(), and set_dock_into_density().

dump_pdb_

bool core::import_pose::options::RNA_BasicOptions::dump_pdb_

private

Referenced by dump_pdb(), and set_dump_pdb().

model_with_density_

bool core::import_pose::options::RNA_BasicOptions::model_with_density_

private

Referenced by model_with_density(), and set_model_with_density().

move_first_rigid_body_

bool core::import_pose::options::RNA_BasicOptions::move_first_rigid_body_

private

Referenced by initialize_from_tag(), move_first_rigid_body(), and set_move_first_rigid_body().

verbose_

bool core::import_pose::options::RNA_BasicOptions::verbose_

private

Referenced by set_verbose(), and verbose().

---

The documentation for this class was generated from the following files:

• src/core/import_pose/options/RNA_BasicOptions.hh
• src/core/import_pose/options/RNA_BasicOptions.cc