| add_schema(utility::tag::XMLSchemaComplexTypeGeneratorOP complex_schema) | core::simple_metrics::PerResidueProbabilitiesMetric | static |
| apply(std::string const &out_label, pose::Pose &pose, bool override_existing_data=false) const override | core::simple_metrics::PerResidueProbabilitiesMetric | virtual |
| apply(std::string const &out_label, pose::Pose &pose, bool override_existing_data=false) const=0 | core::simple_metrics::PerResidueProbabilitiesMetric | |
| apply(pose::Pose &pose, std::string const &prefix="", std::string const &suffix="", bool override_existing_data=false) const | core::simple_metrics::PerResidueProbabilitiesMetric | |
| core::simple_metrics::SimpleMetric::apply(pose::Pose &pose, std::string const &prefix="", std::string const &suffix="", bool override_existing_data=false) const | core::simple_metrics::SimpleMetric | |
| cached_calculate(pose::Pose const &pose, bool use_cache, std::string const &prefix="", std::string const &suffix="", bool fail_on_missing_cache=true, bool use_ref_pose_for_cache=true) const | core::simple_metrics::PerResidueProbabilitiesMetric | |
| calculate(core::pose::Pose const &pose) const override | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | virtual |
| clone() const override | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | virtual |
| complex_type_generator_for_simple_metric(utility::tag::XMLSchemaDefinition &) | core::simple_metrics::SimpleMetric | static |
| custom_type_ | core::simple_metrics::SimpleMetric | private |
| fill_return_map(const std::map< core::Size, utility::vector1< core::Real >> &softmax_map, std::map< core::Size, std::map< core::chemical::AA, core::Real >> &return_map) | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | privatestatic |
| get_custom_type() const | core::simple_metrics::SimpleMetric | |
| get_final_sm_type() const | core::simple_metrics::SimpleMetric | |
| get_metric_names() const override | core::simple_metrics::PerResidueProbabilitiesMetric | virtual |
| get_selection_sequence(std::string const &pose_sequence, std::map< core::Size, utility::vector1< core::Real >> const &position_map) const | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | private |
| get_selector() const | core::simple_metrics::PerResidueProbabilitiesMetric | |
| metric() const override | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | virtual |
| model() const | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | inline |
| model_ | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | private |
| multirun_ | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | private |
| name() const override | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | virtual |
| name_static() | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | static |
| operator=(PerResidueProbabilitiesMetric const &) | core::simple_metrics::PerResidueProbabilitiesMetric | |
| core::simple_metrics::SimpleMetric::operator=(SimpleMetric const &) | core::simple_metrics::SimpleMetric | |
| output_as_pdb_nums_ | core::simple_metrics::PerResidueProbabilitiesMetric | private |
| output_sequence_profile(std::string const &sequence, std::map< core::Size, std::map< core::chemical::AA, core::Real >> const &logit_map, std::string const &output_filename) | core::simple_metrics::PerResidueProbabilitiesMetric | static |
| parse_base_tag(utility::tag::TagCOP tag) | core::simple_metrics::SimpleMetric | virtual |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | virtual |
| parse_per_residue_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) | core::simple_metrics::PerResidueProbabilitiesMetric | virtual |
| PerResidueEsmProbabilitiesMetric() | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | |
| PerResidueEsmProbabilitiesMetric(PerResidueEsmProbabilitiesMetric const &src) | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | |
| PerResidueProbabilitiesMetric() | core::simple_metrics::PerResidueProbabilitiesMetric | |
| PerResidueProbabilitiesMetric(PerResidueProbabilitiesMetric const &other) | core::simple_metrics::PerResidueProbabilitiesMetric | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &citations) const override | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | privatevirtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | static |
| residue_selector() const | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | |
| residue_selector_ | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | private |
| selector_ | core::simple_metrics::PerResidueProbabilitiesMetric | private |
| selector_two_ | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | private |
| set_custom_type(std::string const &custom_type) | core::simple_metrics::SimpleMetric | |
| set_output_as_pdb_nums(bool output_as_pdb_nums) | core::simple_metrics::PerResidueProbabilitiesMetric | |
| set_residue_selector(core::select::residue_selector::ResidueSelectorCOP selector_in) | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | |
| set_residue_selector2(core::select::residue_selector::ResidueSelectorCOP selector) | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | |
| simple_metric_type() const | core::simple_metrics::SimpleMetric | inline |
| simple_metric_type_ | core::simple_metrics::SimpleMetric | private |
| SimpleMetric(std::string const &simple_metric_type) | core::simple_metrics::SimpleMetric | |
| SimpleMetric(SimpleMetric const &other) | core::simple_metrics::SimpleMetric | |
| tag_name_ | core::simple_metrics::SimpleMetric | private |
| tensorflow_protocol_ | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | private |
| write_profile(core::sequence::SequenceProfile &profile, std::string const &output_filename, utility::vector1< core::Size > const &index_to_key) | core::simple_metrics::PerResidueProbabilitiesMetric | privatestatic |
| write_pssm() const | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | inline |
| write_pssm_ | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | private |
| ~PerResidueEsmProbabilitiesMetric() override | protocols::esm_perplexity::PerResidueEsmProbabilitiesMetric | |
| ~PerResidueProbabilitiesMetric() override | core::simple_metrics::PerResidueProbabilitiesMetric | |
| ~SimpleMetric() override | core::simple_metrics::SimpleMetric | |
