ReactionBasedAnalogSampler.cc File Reference

#include <protocols/drug_design/ReactionBasedAnalogSampler.hh>
#include <protocols/drug_design/ReactionBasedAnalogSamplerCreator.hh>
#include <protocols/drug_design/ReactionChemistry.hh>
#include <core/chemical/rdkit/RDMolToRestype.hh>
#include <core/chemical/rdkit/RestypeToRDMol.hh>
#include <core/chemical/rdkit/util.hh>
#include <core/chemical/ResidueType.hh>
#include <protocols/chemistries/util.hh>
#include <core/chemical/gasteiger/GasteigerAtomTypeSet.hh>
#include <core/chemical/Orbital.hh>
#include <core/chemical/ResidueConnection.hh>
#include <utility/io/izstream.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/string_util.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <basic/database/open.hh>
#include <basic/Tracer.hh>
#include <numeric/random/WeightedSampler.hh>
#include <numeric/random/random.hh>
#include <rdkit/DataStructs/BitOps.h>
#include <rdkit/DataStructs/ExplicitBitVect.h>
#include <rdkit/GraphMol/ROMol.h>
#include <rdkit/GraphMol/ChemReactions/Reaction.h>
#include <rdkit/GraphMol/ChemReactions/ReactionParser.h>
#include <rdkit/GraphMol/FileParsers/MolSupplier.h>
#include <rdkit/GraphMol/MolOps.h>
#include <rdkit/GraphMol/SmilesParse/SmilesParse.h>
#include <rdkit/GraphMol/SmilesParse/SmilesWrite.h>
#include <rdkit/GraphMol/SmilesParse/SmartsWrite.h>
#include <rdkit/GraphMol/Substruct/SubstructMatch.h>
#include <rdkit/GraphMol/Fingerprints/MorganFingerprints.h>
#include <rdkit/GraphMol/Fingerprints/Fingerprints.h>
#include <rdkit/GraphMol/MolAlign/O3AAlignMolecules.h>
#include <rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h>
#include <rdkit/GraphMol/DistGeomHelpers/Embedder.h>
#include <list>
#include <set>
#include <unordered_map>
#include <algorithm>
#include <chrono>
#include <iostream>
#include <fstream>
#include <queue>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::drug_design

Functions
static basic::Tracer	protocols::drug_design::TR ("protocols.drug_design.ReactionBasedAnalogSampler")