protocols::indexed_structure_store::search Namespace Reference

Classes
class	StructureData
class	StructureDatabase
class	StructurePairQuery
class	StructureSingleQuery
struct	StructurePairQueryResult
struct	StructureSingleQueryResult
struct	PairQuerySummaryStatistics
struct	SingleQuerySummaryStatistics
class	PairQueryExecutor
class	SingleQueryExecutor

Typedefs
typedef utility::pointer::shared_ptr< StructureDatabase >	StructureDatabaseOP
typedef utility::pointer::shared_ptr< StructureDatabase const >	StructureDatabaseCOP
typedef int64_t	Index
typedef float	SearchReal

Functions
void	to_json (nlohmann::json &j, const SingleQuerySummaryStatistics &s)
void	from_json (const nlohmann::json &j, SingleQuerySummaryStatistics &s)
void	to_json (nlohmann::json &j, const StructureSingleQueryResult &s)
void	from_json (const nlohmann::json &j, StructureSingleQueryResult &s)
void	to_json (nlohmann::json &j, const PairQuerySummaryStatistics &s)
void	from_json (const nlohmann::json &j, PairQuerySummaryStatistics &s)
void	to_json (nlohmann::json &j, const StructurePairQueryResult &s)
void	from_json (const nlohmann::json &j, StructurePairQueryResult &s)
template<typename Module >
void	bind_QueryDatabase (Module &m)

Typedef Documentation

Index

typedef int64_t protocols::indexed_structure_store::search::Index

SearchReal

typedef float protocols::indexed_structure_store::search::SearchReal

StructureDatabaseCOP

typedef utility::pointer::shared_ptr<StructureDatabase const> protocols::indexed_structure_store::search::StructureDatabaseCOP

StructureDatabaseOP

typedef utility::pointer::shared_ptr<StructureDatabase> protocols::indexed_structure_store::search::StructureDatabaseOP

Function Documentation

bind_QueryDatabase()

template<typename Module >

void protocols::indexed_structure_store::search::bind_QueryDatabase

(

Module &

m

)

References protocols::indexed_structure_store::search::StructurePairQuery::c_per_entry, protocols::indexed_structure_store::search::StructureSingleQuery::c_per_entry, protocols::indexed_structure_store::search::StructureData::chain_endpoints, protocols::indexed_structure_store::search::StructureData::coordinate_buffer, core::energy_methods::eval(), protocols::indexed_structure_store::search::PairQueryExecutor::execute(), protocols::indexed_structure_store::search::SingleQueryExecutor::execute(), protocols::indexed_structure_store::search::PairQueryExecutor::execute_structure(), protocols::indexed_structure_store::search::SingleQueryExecutor::execute_structure(), protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_considered, protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::fragments_considered, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_expanded, protocols::indexed_structure_store::search::StructureData::get_fragment_centers_of_mass_copy(), protocols::indexed_structure_store::search::StructureData::get_fragment_indicies_copy(), protocols::indexed_structure_store::search::StructureDatabase::get_structure_data(), core::init::init(), protocols::indexed_structure_store::search::StructureDatabase::initialize(), protocols::indexed_structure_store::search::StructureSingleQuery::n_entry, protocols::indexed_structure_store::search::StructurePairQuery::n_entry_a, protocols::indexed_structure_store::search::StructurePairQuery::n_entry_b, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_aligned, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_considered, protocols::indexed_structure_store::search::StructureSingleQuery::q_buffer, protocols::indexed_structure_store::search::StructurePairQuery::q_buffer_a, protocols::indexed_structure_store::search::StructurePairQuery::q_buffer_b, protocols::indexed_structure_store::search::PairQueryExecutor::query_results, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::result_count, protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::result_count, protocols::indexed_structure_store::search::StructurePairQuery::rmsd_tolerance, protocols::indexed_structure_store::search::StructureSingleQuery::rmsd_tolerance, protocols::indexed_structure_store::search::StructureData::structure_offset, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::structures_considered, and protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::structures_considered.

from_json() [1/4]

void protocols::indexed_structure_store::search::from_json ( const nlohmann::json &  j, PairQuerySummaryStatistics &  s  )

inline

References protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_considered, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_expanded, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_aligned, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_considered, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::result_count, and protocols::indexed_structure_store::search::PairQuerySummaryStatistics::structures_considered.

from_json() [2/4]

void protocols::indexed_structure_store::search::from_json ( const nlohmann::json &  j, SingleQuerySummaryStatistics &  s  )

inline

References protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::fragments_considered, protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::result_count, and protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::structures_considered.

from_json() [3/4]

void protocols::indexed_structure_store::search::from_json ( const nlohmann::json &  j, StructurePairQueryResult &  s  )

inline

References protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_a_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_a_structure_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_b_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_b_structure_start, protocols::indexed_structure_store::search::StructurePairQueryResult::result_rmsd, and protocols::indexed_structure_store::search::StructurePairQueryResult::structure_index.

from_json() [4/4]

void protocols::indexed_structure_store::search::from_json ( const nlohmann::json &  j, StructureSingleQueryResult &  s  )

inline

References protocols::indexed_structure_store::search::StructureSingleQueryResult::fragment_start, protocols::indexed_structure_store::search::StructureSingleQueryResult::fragment_structure_start, protocols::indexed_structure_store::search::StructureSingleQueryResult::result_rmsd, and protocols::indexed_structure_store::search::StructureSingleQueryResult::structure_index.

to_json() [1/4]

void protocols::indexed_structure_store::search::to_json ( nlohmann::json &  j, const PairQuerySummaryStatistics &  s  )

inline

References protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_considered, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_expanded, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_aligned, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_considered, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::result_count, and protocols::indexed_structure_store::search::PairQuerySummaryStatistics::structures_considered.

to_json() [2/4]

void protocols::indexed_structure_store::search::to_json ( nlohmann::json &  j, const SingleQuerySummaryStatistics &  s  )

inline

References protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::fragments_considered, protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::result_count, and protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::structures_considered.

to_json() [3/4]

void protocols::indexed_structure_store::search::to_json ( nlohmann::json &  j, const StructurePairQueryResult &  s  )

inline

References protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_a_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_a_structure_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_b_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_b_structure_start, protocols::indexed_structure_store::search::StructurePairQueryResult::result_rmsd, and protocols::indexed_structure_store::search::StructurePairQueryResult::structure_index.

to_json() [4/4]

void protocols::indexed_structure_store::search::to_json ( nlohmann::json &  j, const StructureSingleQueryResult &  s  )

inline

References protocols::indexed_structure_store::search::StructureSingleQueryResult::fragment_start, protocols::indexed_structure_store::search::StructureSingleQueryResult::fragment_structure_start, protocols::indexed_structure_store::search::StructureSingleQueryResult::result_rmsd, and protocols::indexed_structure_store::search::StructureSingleQueryResult::structure_index.