protocols::stepwise::modeler::options::StepWiseBasicModelerOptions Member List

This is the complete list of members for protocols::stepwise::modeler::options::StepWiseBasicModelerOptions, including all inherited members.

atr_rep_screen() const	protocols::stepwise::options::StepWiseBasicOptions	inline
atr_rep_screen_	protocols::stepwise::options::StepWiseBasicOptions	private
atr_rep_screen_for_docking() const	protocols::stepwise::options::StepWiseBasicOptions	inline
atr_rep_screen_for_docking_	protocols::stepwise::options::StepWiseBasicOptions	private
boltzmann_choice_post_enumerated_minimize() const	protocols::stepwise::options::StepWiseBasicOptions	inline
boltzmann_choice_post_enumerated_minimize_	protocols::stepwise::options::StepWiseBasicOptions	private
choose_random() const	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
choose_random_	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	protected
clone() const	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions
cluster_rmsd() const	protocols::stepwise::options::StepWiseBasicOptions	inline
cluster_rmsd_	protocols::stepwise::options::StepWiseBasicOptions	private
coordinate_constraints_during_minimize() const	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
coordinate_constraints_during_minimize_	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	protected
disallow_pack_polar_hydrogens() const	protocols::stepwise::options::StepWiseBasicOptions	inline
disallow_pack_polar_hydrogens_	protocols::stepwise::options::StepWiseBasicOptions	private
disallow_realign() const	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
disallow_realign_	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	protected
dump() const	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
dump_	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	protected
hydrate_magnesiums() const	protocols::stepwise::options::StepWiseBasicOptions	inline
hydrate_magnesiums_	protocols::stepwise::options::StepWiseBasicOptions	private
initialize_from_command_line()	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	protected
initialize_from_options_collection(utility::options::OptionCollection const &options)	protocols::stepwise::options::StepWiseBasicOptions	protected
initialize_variables()	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	protected
list_options_read(utility::options::OptionKeyList &opt)	protocols::stepwise::options::StepWiseBasicOptions	static
lores() const	protocols::stepwise::options::StepWiseBasicOptions	inline
lores_	protocols::stepwise::options::StepWiseBasicOptions	private
mapfile_activated() const	protocols::stepwise::options::StepWiseBasicOptions	inline
mapfile_activated_	protocols::stepwise::options::StepWiseBasicOptions	private
max_tries_multiplier_for_ccd() const	protocols::stepwise::options::StepWiseBasicOptions	inline
max_tries_multiplier_for_ccd_	protocols::stepwise::options::StepWiseBasicOptions	private
min_tolerance() const	protocols::stepwise::options::StepWiseBasicOptions	inline
min_tolerance_	protocols::stepwise::options::StepWiseBasicOptions	private
min_type() const	protocols::stepwise::options::StepWiseBasicOptions	inline
min_type_	protocols::stepwise::options::StepWiseBasicOptions	private
minimize_waters() const	protocols::stepwise::options::StepWiseBasicOptions	inline
minimize_waters_	protocols::stepwise::options::StepWiseBasicOptions	private
minimizer_mode() const	protocols::stepwise::options::StepWiseBasicOptions	inline
minimizer_mode_	protocols::stepwise::options::StepWiseBasicOptions	private
n_cycles() const	protocols::stepwise::options::StepWiseBasicOptions	inline
n_cycles_	protocols::stepwise::options::StepWiseBasicOptions	private
num_pose_minimize() const	protocols::stepwise::options::StepWiseBasicOptions	inline
num_pose_minimize_	protocols::stepwise::options::StepWiseBasicOptions	private
num_random_samples() const	protocols::stepwise::options::StepWiseBasicOptions	inline
num_random_samples_	protocols::stepwise::options::StepWiseBasicOptions	private
output_cluster_size() const	protocols::stepwise::options::StepWiseBasicOptions	inline
output_cluster_size_	protocols::stepwise::options::StepWiseBasicOptions	private
output_minimized_pose_list() const	protocols::stepwise::options::StepWiseBasicOptions	inline
output_minimized_pose_list_	protocols::stepwise::options::StepWiseBasicOptions	private
parse_my_tag(utility::tag::TagCOP) override	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inlinevirtual
rmsd_screen() const	protocols::stepwise::options::StepWiseBasicOptions	inline
rmsd_screen_	protocols::stepwise::options::StepWiseBasicOptions	private
sample_pH() const	protocols::stepwise::options::StepWiseBasicOptions	inline
sample_pH_	protocols::stepwise::options::StepWiseBasicOptions	private
sampler_num_pose_kept() const	protocols::stepwise::options::StepWiseBasicOptions	inline
sampler_num_pose_kept_	protocols::stepwise::options::StepWiseBasicOptions	private
sampler_silent_file() const	protocols::stepwise::options::StepWiseBasicOptions	inline
sampler_silent_file_	protocols::stepwise::options::StepWiseBasicOptions	private
set_atr_rep_screen(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_atr_rep_screen_for_docking(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_boltzmann_choice_post_enumerated_minimize(bool const setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_choose_random(bool const &setting)	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
set_cluster_rmsd(core::Real const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_coordinate_constraints_during_minimize(bool const setting)	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
set_disallow_pack_polar_hydrogens(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_disallow_realign(bool const setting)	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
set_dump(bool const &setting)	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
set_hydrate_magnesiums(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_lores(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_mapfile_activated(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_max_tries_multiplier_for_ccd(core::Size const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_min_tolerance(core::Real const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_min_type(std::string const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_minimize_waters(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_minimizer_mode(modeler::MinimizerMode const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_n_cycles(core::Size const setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_num_pose_minimize(core::Size const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_num_random_samples(core::Size const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_output_cluster_size(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_output_minimized_pose_list(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_rmsd_screen(core::Real const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_sample_pH(bool const setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_sampler_num_pose_kept(core::Size const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_sampler_silent_file(std::string const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_silent_file(std::string const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_skip_minimize(bool const &setting)	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
set_test_all_mg_hydration_frames(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_thermal_sampler_output_min_pose(bool const setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_use_green_packer(bool const &setting)	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
set_use_packer_instead_of_rotamer_trials(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_vary_polar_hydrogen_geometry(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_vary_rna_bond_geometry(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_VDW_rep_screen_info(utility::vector1< std::string > const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_verbose(bool const &setting)	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
set_verbose_sampler(bool const &setting)	protocols::stepwise::options::StepWiseBasicOptions	inline
set_virtualize_packable_moieties_in_screening_pose(bool const setting)	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
silent_file() const	protocols::stepwise::options::StepWiseBasicOptions	inline
silent_file_	protocols::stepwise::options::StepWiseBasicOptions	private
skip_minimize() const	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
skip_minimize_	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	protected
StepWiseBasicModelerOptions()	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions
StepWiseBasicOptions()	protocols::stepwise::options::StepWiseBasicOptions
test_all_mg_hydration_frames() const	protocols::stepwise::options::StepWiseBasicOptions	inline
test_all_mg_hydration_frames_	protocols::stepwise::options::StepWiseBasicOptions	private
thermal_sampler_output_min_pose() const	protocols::stepwise::options::StepWiseBasicOptions	inline
thermal_sampler_output_min_pose_	protocols::stepwise::options::StepWiseBasicOptions	private
thermal_sampler_temperature() const	protocols::stepwise::options::StepWiseBasicOptions	inline
thermal_sampler_temperature_	protocols::stepwise::options::StepWiseBasicOptions	private
type() const override	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inlinevirtual
use_green_packer() const	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
use_green_packer_	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	protected
use_packer_instead_of_rotamer_trials() const	protocols::stepwise::options::StepWiseBasicOptions	inline
use_packer_instead_of_rotamer_trials_	protocols::stepwise::options::StepWiseBasicOptions	private
vary_polar_hydrogen_geometry() const	protocols::stepwise::options::StepWiseBasicOptions	inline
vary_polar_hydrogen_geometry_	protocols::stepwise::options::StepWiseBasicOptions	private
vary_rna_bond_geometry() const	protocols::stepwise::options::StepWiseBasicOptions	inline
vary_rna_bond_geometry_	protocols::stepwise::options::StepWiseBasicOptions	private
VDW_rep_screen_info() const	protocols::stepwise::options::StepWiseBasicOptions	inline
VDW_rep_screen_info_	protocols::stepwise::options::StepWiseBasicOptions	private
verbose() const	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
verbose_	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	protected
verbose_sampler() const	protocols::stepwise::options::StepWiseBasicOptions	inline
verbose_sampler_	protocols::stepwise::options::StepWiseBasicOptions	private
virtualize_packable_moieties_in_screening_pose() const	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	inline
virtualize_packable_moieties_in_screening_pose_	protocols::stepwise::modeler::options::StepWiseBasicModelerOptions	protected