protocols::sic_dock::XfoxmScore Struct Reference

#include <designability_score.hh>

Public Member Functions
	XfoxmScore (std::string datadir)
void	fillarray (char *a, std::string fname)
void	makebinary (char *a, std::string fname)
float	score (Xform const &s1, Xform const &s2, char ss1, char ss2) const
float	score (core::pose::Pose const &pose, platform::Size rsd1, platform::Size rsd2) const
float	score (core::pose::Pose &pose, bool compute_ss=true) const
float	score (core::pose::Pose const &pose) const

Public Attributes
char *	hh
char *	he
char *	hl
char *	ee
char *	el
char *	ll

Constructor & Destructor Documentation

XfoxmScore()

protocols::sic_dock::XfoxmScore::XfoxmScore

(

std::string

datadir

)

References ee, el, fillarray(), he, hh, hl, and ll.

Member Function Documentation

fillarray()

void protocols::sic_dock::XfoxmScore::fillarray	(	char *	a,
		std::string	fname
	)

References core::pose::motif::a(), and core::conformation::membrane::in.

Referenced by XfoxmScore().

makebinary()

void protocols::sic_dock::XfoxmScore::makebinary	(	char *	a,
		std::string	fname
	)

References core::pose::motif::a(), core::conformation::membrane::in, protocols::mean_field::max(), protocols::mean_field::min(), and core::conformation::membrane::out.

score() [1/4]

float protocols::sic_dock::XfoxmScore::score	(	core::pose::Pose &	pose,
		bool	compute_ss = true
	)		const

References protocols::simple_filters::dssp(), score(), and core::pose::Pose::size().

score() [2/4]

float protocols::sic_dock::XfoxmScore::score

(

core::pose::Pose const &

pose

)

const

References score(), and core::pose::Pose::size().

score() [3/4]

float protocols::sic_dock::XfoxmScore::score	(	core::pose::Pose const &	pose,
		platform::Size	rsd1,
		platform::Size	rsd2
	)		const

References core::conformation::Residue::has(), core::conformation::Residue::is_protein(), core::chemical::element::Ni, core::pose::Pose::residue(), score(), core::pose::Pose::secstruct(), and core::conformation::Residue::xyz().

score() [4/4]

float protocols::sic_dock::XfoxmScore::score	(	Xform const &	s1,
		Xform const &	s2,
		char	ss1,
		char	ss2
	)		const

References core::pose::motif::a(), ee, protocols::sic_dock::get_xform_stats(), he, hh, protocols::mean_field::min(), and protocols::hybridization::val.

Referenced by score().

Member Data Documentation

ee

char * protocols::sic_dock::XfoxmScore::ee

Referenced by score(), and XfoxmScore().

el

char * protocols::sic_dock::XfoxmScore::el

Referenced by XfoxmScore().

he

char * protocols::sic_dock::XfoxmScore::he

Referenced by score(), and XfoxmScore().

hh

char* protocols::sic_dock::XfoxmScore::hh

Referenced by score(), and XfoxmScore().

hl

char * protocols::sic_dock::XfoxmScore::hl

Referenced by XfoxmScore().

ll

char * protocols::sic_dock::XfoxmScore::ll

Referenced by XfoxmScore().

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The documentation for this struct was generated from the following files:

• src/protocols/sic_dock/designability_score.hh
• src/protocols/sic_dock/designability_score.cc