protocols::motif_grafting::movers::motif2scaffold_data Struct Reference

structure that contains the motif2scaffold_indexes data in a vector and adds fields for fragment matching information More...

#include <MotifGraftMover.hh>

Public Attributes
utility::vector1< motif2scaffold_indexes >	v_indexes
numeric::xyzMatrix< core::Real >	RotM = numeric::xyzMatrix< core::Real >(0.0)
numeric::xyzVector< core::Real >	TvecA = {0.0, 0.0, 0.0}
numeric::xyzVector< core::Real >	TvecB = {0.0, 0.0, 0.0}
core::Real	RMSD = 0
core::Real	motif_fragments_RMSD = 0
core::Size	clash_score = 0
utility::vector1< utility::vector1< core::Size > >	vvr_hotspots
bool	b_allow_independent_alignment_per_fragment = false
bool	b_full_motif_bb_alignment = false
bool	b_graft_only_hotspots_by_sidechain_replacement = false

Detailed Description

structure that contains the motif2scaffold_indexes data in a vector and adds fields for fragment matching information

Member Data Documentation

b_allow_independent_alignment_per_fragment

bool protocols::motif_grafting::movers::motif2scaffold_data::b_allow_independent_alignment_per_fragment = false

Referenced by protocols::motif_grafting::movers::MotifMatch::MotifMatch(), and protocols::motif_grafting::movers::MotifGraftMover::stich_motif_in_scaffold_by_indexes_rotation_and_translation().

b_full_motif_bb_alignment

bool protocols::motif_grafting::movers::motif2scaffold_data::b_full_motif_bb_alignment = false

Referenced by protocols::motif_grafting::movers::MotifMatch::MotifMatch(), and protocols::motif_grafting::movers::MotifGraftMover::stich_motif_in_scaffold_by_indexes_rotation_and_translation().

b_graft_only_hotspots_by_sidechain_replacement

bool protocols::motif_grafting::movers::motif2scaffold_data::b_graft_only_hotspots_by_sidechain_replacement = false

Referenced by protocols::motif_grafting::movers::MotifMatch::MotifMatch(), and protocols::motif_grafting::movers::MotifGraftMover::stich_motif_in_scaffold_by_indexes_rotation_and_translation().

clash_score

core::Size protocols::motif_grafting::movers::motif2scaffold_data::clash_score = 0

Referenced by protocols::motif_grafting::movers::MotifMatch::MotifMatch().

motif_fragments_RMSD

core::Real protocols::motif_grafting::movers::motif2scaffold_data::motif_fragments_RMSD = 0

Referenced by protocols::motif_grafting::movers::MotifMatch::MotifMatch(), and protocols::motif_grafting::movers::MotifGraftMover::stich_motif_in_scaffold_by_indexes_rotation_and_translation().

RMSD

core::Real protocols::motif_grafting::movers::motif2scaffold_data::RMSD = 0

Referenced by protocols::motif_grafting::movers::MotifMatch::MotifMatch().

RotM

numeric::xyzMatrix< core::Real > protocols::motif_grafting::movers::motif2scaffold_data::RotM = numeric::xyzMatrix< core::Real >(0.0)

Referenced by protocols::motif_grafting::movers::MotifMatch::get_homogeneous_transform_com_from_orig(), and protocols::motif_grafting::movers::MotifGraftMover::stich_motif_in_scaffold_by_indexes_rotation_and_translation().

TvecA

numeric::xyzVector< core::Real > protocols::motif_grafting::movers::motif2scaffold_data::TvecA = {0.0, 0.0, 0.0}

Referenced by protocols::motif_grafting::movers::MotifMatch::get_homogeneous_transform_com_from_orig(), and protocols::motif_grafting::movers::MotifGraftMover::stich_motif_in_scaffold_by_indexes_rotation_and_translation().

TvecB

numeric::xyzVector< core::Real > protocols::motif_grafting::movers::motif2scaffold_data::TvecB = {0.0, 0.0, 0.0}

Referenced by protocols::motif_grafting::movers::MotifMatch::get_homogeneous_transform_com_from_orig(), and protocols::motif_grafting::movers::MotifGraftMover::stich_motif_in_scaffold_by_indexes_rotation_and_translation().

v_indexes

utility::vector1< motif2scaffold_indexes > protocols::motif_grafting::movers::motif2scaffold_data::v_indexes

Referenced by protocols::motif_grafting::movers::MotifGraftMover::fragments_permutation_test_by_CA_distances(), protocols::motif_grafting::movers::MotifMatch::MotifMatch(), and protocols::motif_grafting::movers::MotifGraftMover::stich_motif_in_scaffold_by_indexes_rotation_and_translation().

vvr_hotspots

utility::vector1< utility::vector1< core::Size > > protocols::motif_grafting::movers::motif2scaffold_data::vvr_hotspots

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The documentation for this struct was generated from the following file:

• src/protocols/motif_grafting/movers/MotifGraftMover.hh