#include <FragmentStore.hh>

Inheritance diagram for protocols::indexed_structure_store::FragmentStore:

Public Member Functions
	FragmentStore (FragmentSpecification fragment_specification, numeric::Size num_fragments=0)

FragmentStoreOP	get_self_ptr ()
	self pointer More...

void	resize (numeric::Size num_fragments)

void	add_threshold_distance_allFrag (numeric::Real distance)

template<class T >
void	inline_vector_delete (std::vector< T > &data_vector, const std::vector< bool > &delete_vector)

std::set< std::string >	get_homologs ()

void	delete_homologs ()

void	generate_residue_subset_fragment_store (std::vector< numeric::Size > residues)

FragmentLookupOP	get_fragmentLookup ()

std::vector< numeric::xyzVector< numeric::Real > >	get_fragment_coordinates (numeric::Size position)

Public Attributes
FragmentSpecification	fragment_specification

numeric::Size	num_fragments_

numeric::Size	hash_id

std::vector< numeric::Real >	fragment_threshold_distances

std::vector< numeric::xyzVector< numeric::Real > >	fragment_coordinates

std::map< std::string, std::vector< numeric::Size > >	int64_groups

std::map< std::string, std::vector< numeric::Real > >	real_groups

std::map< std::string, std::vector< std::vector< numeric::Real > > >	realVector_groups

std::map< std::string, std::vector< std::string > >	string_groups

FragmentStoreOP	residue_subset_fragment_store

Private Attributes
std::mutex	frag_lookup_mutex

FragmentLookupOP	fragLookupOP_

Constructor & Destructor Documentation

◆ FragmentStore()

protocols::indexed_structure_store::FragmentStore::FragmentStore	(	FragmentSpecification	fragment_specification,
		numeric::Size	num_fragments = `0`
	)

References fragLookupOP_, and num_fragments_.

Member Function Documentation

◆ add_threshold_distance_allFrag()

void protocols::indexed_structure_store::FragmentStore::add_threshold_distance_allFrag ( numeric::Real distance )

References core::kinematics::distance(), and fragment_threshold_distances.

◆ delete_homologs()

void protocols::indexed_structure_store::FragmentStore::delete_homologs ( )

References fragment_coordinates, protocols::indexed_structure_store::FragmentSpecification::fragment_length, fragment_specification, fragment_threshold_distances, get_homologs(), inline_vector_delete(), int64_groups, num_fragments_, real_groups, realVector_groups, and string_groups.

◆ generate_residue_subset_fragment_store()

void protocols::indexed_structure_store::FragmentStore::generate_residue_subset_fragment_store ( std::vector< numeric::Size > residues )

References protocols::indexed_structure_store::FragmentSpecification::coordinates_per_fragment(), protocols::indexed_structure_store::FragmentSpecification::fragment_atoms, fragment_coordinates, fragment_specification, num_fragments_, and residue_subset_fragment_store.

◆ get_fragment_coordinates()

std::vector< numeric::xyzVector< numeric::Real > > protocols::indexed_structure_store::FragmentStore::get_fragment_coordinates ( numeric::Size position )

References protocols::indexed_structure_store::FragmentSpecification::coordinates_per_fragment(), protocols::indexed_structure_store::FragmentSpecification::fragment_atoms, fragment_coordinates, and fragment_specification.

◆ get_fragmentLookup()

FragmentLookupOP protocols::indexed_structure_store::FragmentStore::get_fragmentLookup ( )

References frag_lookup_mutex, fragLookupOP_, and get_self_ptr().

◆ get_homologs()

std::set< std::string > protocols::indexed_structure_store::FragmentStore::get_homologs ( )

Referenced by delete_homologs().

◆ get_self_ptr()

FragmentStoreOP protocols::indexed_structure_store::FragmentStore::get_self_ptr ( )

inline

self pointer

Referenced by get_fragmentLookup().

◆ inline_vector_delete()

template<class T >

void protocols::indexed_structure_store::FragmentStore::inline_vector_delete	(	std::vector< T > &	data_vector,
		const std::vector< bool > &	delete_vector
	)