| add_mover(moves::MoverOP const &mover) | protocols::ligand_evolution::Scorer | |
| apply_movers() | protocols::ligand_evolution::Scorer | private |
| base_similarity_penalty_ | protocols::ligand_evolution::Scorer | private |
| basic_pose_ | protocols::ligand_evolution::Scorer | private |
| best_pose_ | protocols::ligand_evolution::Scorer | private |
| calculate_scores(core::Size save_n_scores=0) | protocols::ligand_evolution::Scorer | private |
| check_memory(LigandIdentifier const &ligand) | protocols::ligand_evolution::Scorer | |
| create_pose() | protocols::ligand_evolution::Scorer | private |
| current_ligand_ | protocols::ligand_evolution::Scorer | private |
| current_ligand_smiles_ | protocols::ligand_evolution::Scorer | private |
| current_runs_ | protocols::ligand_evolution::Scorer | private |
| dump_pose() | protocols::ligand_evolution::Scorer | private |
| expose_id_memory() const | protocols::ligand_evolution::Scorer | |
| get_best_loaded(core::Size size) const | protocols::ligand_evolution::Scorer | |
| get_raw_scores(LigandIdentifier const &identifier) const | protocols::ligand_evolution::Scorer | |
| get_scores(LigandIdentifier const &ligand) const | protocols::ligand_evolution::Scorer | |
| has_ligand() const | protocols::ligand_evolution::Scorer | |
| id_memory_ | protocols::ligand_evolution::Scorer | private |
| initialize_from_options(EvolutionOptionsCOP options, protocols::rosetta_scripts::XmlObjectsCOP rosetta_script, core::Size rank) | protocols::ligand_evolution::Scorer | |
| is_scored(LigandIdentifier const &ligand) const | protocols::ligand_evolution::Scorer | |
| library_ | protocols::ligand_evolution::Scorer | private |
| ligand_chain_ | protocols::ligand_evolution::Scorer | private |
| ligand_line(LigandIdentifier const &identifier) const | protocols::ligand_evolution::Scorer | private |
| load_scores(std::string const &path) | protocols::ligand_evolution::Scorer | |
| loaded_score_memory_ | protocols::ligand_evolution::Scorer | private |
| main_score_term_ | protocols::ligand_evolution::Scorer | private |
| mover_ | protocols::ligand_evolution::Scorer | private |
| n_runs_ | protocols::ligand_evolution::Scorer | private |
| n_score_terms() const | protocols::ligand_evolution::Scorer | |
| next_step(core::Size save_n_scores=0) | protocols::ligand_evolution::Scorer | |
| pose_path_ | protocols::ligand_evolution::Scorer | private |
| save_external_scoring_results(core::Size rank) | protocols::ligand_evolution::Scorer | |
| save_results() const | protocols::ligand_evolution::Scorer | |
| score_function_ | protocols::ligand_evolution::Scorer | private |
| score_individual(Individual &individual) | protocols::ligand_evolution::Scorer | |
| score_ligand(LigandIdentifier const &ligand, std::string const &smiles="", core::Size save_n_scores=0) | protocols::ligand_evolution::Scorer | |
| score_memory_ | protocols::ligand_evolution::Scorer | private |
| score_next_ | protocols::ligand_evolution::Scorer | private |
| score_population(Population &pop) | protocols::ligand_evolution::Scorer | |
| Scorer(FragmentLibrary &library, core::Size n_runs, char ligand_chain) | protocols::ligand_evolution::Scorer | |
| set_base_similarity_penalty(core::Real base_penalty) | protocols::ligand_evolution::Scorer | |
| set_ligand(LigandIdentifier const &ligand, std::string const &smiles="") | protocols::ligand_evolution::Scorer | |
| set_main_term(std::string const &score_term) | protocols::ligand_evolution::Scorer | |
| set_pose_path(std::string const &path) | protocols::ligand_evolution::Scorer | |
| set_raw_scores(LigandIdentifier const &identifier, double const *raw_scores) | protocols::ligand_evolution::Scorer | |
| set_score_function(core::scoring::ScoreFunctionOP score_function) | protocols::ligand_evolution::Scorer | |
| set_scores(LigandIdentifier const &identifier, std::map< std::string, core::Real > const &scores) | protocols::ligand_evolution::Scorer | |
| set_similarity_penalty_threshold(core::Real threshold) | protocols::ligand_evolution::Scorer | |
| similarity_penalty_threshold_ | protocols::ligand_evolution::Scorer | private |
| working_pose_ | protocols::ligand_evolution::Scorer | private |
