protocols::rotamer_gen::FragmentRotamers Class Reference

#include <FragmentRotamers.hh>

Inheritance diagram for protocols::rotamer_gen::FragmentRotamers:

Public Member Functions
	FragmentRotamers ()
void	parse_my_tag (utility::tag::TagCOP, basic::datacache::DataMap &) override
	Initialize any data members of this instance from an input tag and a DataMap object. More...
void	apply (core::chemical::MutableResidueType &restype) override
	Modify the passed ResidueType. More...
Public Member Functions inherited from protocols::chemistries::Chemistry
	Chemistry (std::string const &name)
virtual void	apply (core::chemical::MutableResidueType &restype, core::pose::Pose const &)
	Modify the passed ResidueType, context sensitive. More...
Public Member Functions inherited from core::chemical::modifications::ChemistryBase
	ChemistryBase (std::string const &name)
std::string	name () const
	Return the name of this Chemistry object. More...
virtual bool	has_additional_output () const
	Are there alternate ResidueTypes which are availible from the last time we called apply? (That is, will get_addtional_output() return non-null?) More...
virtual core::chemical::MutableResidueTypeOP	get_additional_output ()
	Get additional generated ResidueTypes, if any. This allows for 1-to-many Chemistries. More...
virtual VDVDMapping	get_mapping () const
	Get the vertex mapping that was used for the last apply() or get_additional_output() This is a mapping FROM the vds in the BEFORE MutableResidueType TO the vds in the AFTER MutableResidueType. The base class implementation defaults to an identity mapping. More...
ChemistryStatus	get_last_status () const
	What was the status of the last call to apply()/get_additional_output() More...
void	set_last_status (ChemistryStatus setting)
	Set the status of the chemistry object. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Constructor & Destructor Documentation

FragmentRotamers()

protocols::rotamer_gen::FragmentRotamers::FragmentRotamers ( )

inline

Member Function Documentation

apply()

void protocols::rotamer_gen::FragmentRotamers::apply ( core::chemical::MutableResidueType &  )

overridevirtual

Modify the passed ResidueType.

if you have a Pose, call the one which takes the Pose context

Implements protocols::chemistries::Chemistry.

References core::chemical::MutableResidueType::atom(), core::chemical::bcl::BCLFragmentHandler::get_vd_to_index(), core::chemical::Atom::name(), core::chemical::ResidueTypeBase::name(), core::chemical::bcl::require_bcl(), core::chemical::AtomRefMapping< FromRef, ToRef >::reverse(), core::chemical::ResidueTypeBase::rotamer_library_specification(), and protocols::rotamer_gen::TR().

class_name()

std::string protocols::rotamer_gen::FragmentRotamers::class_name ( )

static

Referenced by protocols::rotamer_gen::FragmentRotamersCreator::keyname(), and provide_xml_schema().

parse_my_tag()

void protocols::rotamer_gen::FragmentRotamers::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Initialize any data members of this instance from an input tag and a DataMap object.

Implements protocols::chemistries::Chemistry.

provide_xml_schema()

void protocols::rotamer_gen::FragmentRotamers::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::chemistries::xsd_type_definition_w_attributes().

Referenced by protocols::rotamer_gen::FragmentRotamersCreator::provide_xml_schema().

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The documentation for this class was generated from the following files:

• src/protocols/rotamer_gen/FragmentRotamers.hh
• src/protocols/rotamer_gen/FragmentRotamers.cc