core::sequence::Blosum62Map Struct Reference

#include <Blosum62Map.hh>

Public Member Functions
	Blosum62Map ()
	~Blosum62Map ()=default
int	score_for_aa_pair (std::pair< char, char > name1s) const
int	score_for_aa_pair (char aa1, char aa2) const

Private Attributes
std::unordered_map< std::pair< char, char >, int, CharPairHash >	map_

Constructor & Destructor Documentation

Blosum62Map()

core::sequence::Blosum62Map::Blosum62Map ( )

inline

~Blosum62Map()

core::sequence::Blosum62Map::~Blosum62Map ( )

default

Member Function Documentation

score_for_aa_pair() [1/2]

int core::sequence::Blosum62Map::score_for_aa_pair ( char  aa1, char  aa2  ) const

inline

References score_for_aa_pair().

score_for_aa_pair() [2/2]

int core::sequence::Blosum62Map::score_for_aa_pair ( std::pair< char, char >  name1s ) const

inline

References map_.

Referenced by core::simple_metrics::metrics::SequenceSimilarityMetric::score(), and score_for_aa_pair().

Member Data Documentation

map_

std::unordered_map< std::pair< char, char >, int, CharPairHash > core::sequence::Blosum62Map::map_

private

Referenced by score_for_aa_pair().

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The documentation for this struct was generated from the following file:

• src/core/sequence/Blosum62Map.hh