RNA_Motif.cc File Reference

#include <core/scoring/rna/RNA_Motif.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <utility/string_util.hh>
#include <basic/Tracer.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/rna/RNA_FilteredBaseBaseInfo.hh>
#include <utility/stream_util.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::scoring
	core::scoring::rna

Functions
static basic::Tracer	TR ("core.scoring.rna.RNA_Motif")
RNA_Motifs	core::scoring::rna::get_rna_motifs (pose::Pose const &pose, core::scoring::rna::RNA_LowResolutionPotential const &potential, core::pose::rna::RNA_FilteredBaseBaseInfo const &filtered_base_base_info)
	identify RNA motifs inside pose More...
void	core::scoring::rna::output_rna_motifs (std::ostream &out, core::pose::Pose const &pose, RNA_Motifs const &rna_motifs, bool const output_WC_stacked_pair)
void	core::scoring::rna::output_motifs_to_pymol (std::ostream &out, core::pose::Pose const &pose, RNA_Motifs const &rna_motifs)
	sets up .pml file that will color motifs. More...
void	core::scoring::rna::output_rna_motif (pose::Pose const &pose, RNA_Motif const &motif)
std::ostream &	core::scoring::rna::operator<< (std::ostream &out, RNA_Motif const &s)

Detailed Description

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Function Documentation

TR()

static basic::Tracer TR ( "core.scoring.rna.RNA_Motif"  )

static