| aa_matrix() const | protocols::mean_field::DesignMeanField | |
| aa_matrix_ | protocols::mean_field::DesignMeanField | private |
| alt_rot_matrix() const | protocols::mean_field::MeanField | inline |
| alt_rot_matrix_ | protocols::mean_field::MeanField | private |
| build_rot_matrix_for_pose(core::Size pose_ind) | protocols::mean_field::MeanField | |
| calc_alt_rot_matrix() | protocols::mean_field::MeanField | private |
| calc_energies_matrix() | protocols::mean_field::MeanField | private |
| converge() | protocols::mean_field::MeanField | |
| convert_energies_to_alt_rm() | protocols::mean_field::MeanField | private |
| delete_pose(core::Size pose_ind) | protocols::mean_field::MeanField | virtual |
| DesignMeanField(core::Size option, core::pose::PoseOPs &poses, utility::vector1< core::pack::task::PackerTaskOP > tasks, core::scoring::ScoreFunctionOP scfxn) | protocols::mean_field::DesignMeanField | |
| DesignMeanField(core::Size option, core::pose::PoseOPs &poses, utility::vector1< core::pack::task::PackerTaskOP > tasks, core::scoring::ScoreFunctionOP scfxn, core::Real lambda_mem, core::Real tolerance, core::Real temp, core::Real threshold) | protocols::mean_field::DesignMeanField | |
| DesignMeanField() | protocols::mean_field::DesignMeanField | private |
| DesignMeanField(DesignMeanField const &object_to_copy) | protocols::mean_field::DesignMeanField | private |
| energies_matrix() const | protocols::mean_field::MeanField | inline |
| energies_matrix_ | protocols::mean_field::MeanField | private |
| has_converged() const | protocols::mean_field::MeanField | private |
| init_aa_matrix() | protocols::mean_field::DesignMeanField | private |
| init_option() const | protocols::mean_field::MeanField | inline |
| init_option_ | protocols::mean_field::MeanField | private |
| lambda_memory() const | protocols::mean_field::MeanField | inline |
| lambda_memory_ | protocols::mean_field::MeanField | private |
| MeanField(core::Size const option, core::pose::PoseOPs &poses, utility::vector1< core::pack::task::PackerTaskOP > const &tasks, core::scoring::ScoreFunctionOP scfxn) | protocols::mean_field::MeanField | |
| MeanField(core::Size const option, core::pose::PoseOPs &poses, utility::vector1< core::pack::task::PackerTaskOP > const &tasks, core::scoring::ScoreFunctionOP scfxn, core::Real lambda_mem, core::Real tolerance, core::Real temp, core::Real threshold) | protocols::mean_field::MeanField | |
| MeanField() | protocols::mean_field::MeanField | private |
| MeanField(MeanField const &object_to_copy) | protocols::mean_field::MeanField | private |
| num_packed() const | protocols::mean_field::MeanField | |
| num_poses() const | protocols::mean_field::MeanField | inline |
| operator<<(std::ostream &output, DesignMeanField const &object_to_output) | protocols::mean_field::DesignMeanField | friend |
| operator=(DesignMeanField const &object_to_copy) | protocols::mean_field::DesignMeanField | private |
| pig_ | protocols::mean_field::MeanField | private |
| poses_ | protocols::mean_field::MeanField | private |
| process() override | protocols::mean_field::DesignMeanField | virtual |
| rot_matrix() const | protocols::mean_field::MeanField | virtual |
| rot_matrix_ | protocols::mean_field::MeanField | private |
| scfxn_ | protocols::mean_field::MeanField | private |
| show(std::ostream &output=std::cout) const | protocols::mean_field::DesignMeanField | |
| tasks_ | protocols::mean_field::MeanField | private |
| temperature() const | protocols::mean_field::MeanField | inline |
| temperature_ | protocols::mean_field::MeanField | private |
| threshold() const | protocols::mean_field::MeanField | inline |
| threshold_ | protocols::mean_field::MeanField | private |
| tolerance() const | protocols::mean_field::MeanField | inline |
| tolerance_ | protocols::mean_field::MeanField | private |
| ~DesignMeanField() override | protocols::mean_field::DesignMeanField | |
| ~MeanField() override | protocols::mean_field::MeanField | |
