EsmPerplexityTensorflowProtocol.cc File Reference

A class for predicting amino acid probabilities P(Sequence|Sequence) using the ESM language model. More...

#include <protocols/esm_perplexity/EsmPerplexityTensorflowProtocol.hh>
#include <utility>
#include <utility/pointer/owning_ptr.hh>
#include <utility/file/file_sys_util.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <basic/Tracer.hh>
#include <basic/database/open.hh>
#include <basic/execute.hh>
#include <basic/tensorflow_manager/RosettaTensorflowManager.hh>
#include <basic/tensorflow_manager/RosettaTensorflowTensorContainer.tmpl.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/machine_learning.OptionKeys.gen.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/conformation/Residue.hh>
#include <chrono>
#include <iostream>
#include <cmath>
#include <boost/format.hpp>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::esm_perplexity

Functions
static basic::Tracer	TR ("protocols.esm_perplexity.EsmPerplexityTensorflowProtocol")

Detailed Description

A class for predicting amino acid probabilities P(Sequence|Sequence) using the ESM language model.

Author

Moritz Ertelt (morit.nosp@m.z.er.nosp@m.telt@.nosp@m.goog.nosp@m.lemai.nosp@m.l.co.nosp@m.m)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.esm_perplexity.EsmPerplexityTensorflowProtocol"  )

static