core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper Member List

This is the complete list of members for core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper, including all inherited members.

::LK_DomeEnergyTests class	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	friend
add_remove_rotamer(utility::vector1< core::Size > const &current_rotamer_ids, Size const substitution_position, bool add)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
add_waters(Size position, Size rotamer)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
calculate_energy(utility::vector1< core::conformation::ResidueCOP > const &resvect, utility::vector1< core::Size > const &current_rotamer_ids, core::Size const substitution_position)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper
commit_considered_substitution()	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper
current_rotamer_at_seqpos_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
current_score() const	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper
current_score_at_seqpos_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
current_water_interact_sum_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
current_water_occl_sum_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
current_waters_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
debug_store_waters_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
debug_waters_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
fake_lr_scorefxn_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
get_score_data_offset(uint32_t water_seqpos, uint16_t water_id, uint32_t other_seqpos, uint32_t other_rotamer)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
init()	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
init_water_scores(Size position)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
init_with_pose(core::pose::Pose const &pose, core::pack::rotamer_set::RotamerSets const &rotamer_sets)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper
lk_ball_bridge2_weight_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
lk_ball_bridge_uncpl2_weight_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
lk_dome() const	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
lk_dome_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
lk_dome_bridge_uncpl_weight_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
lk_dome_bridge_weight_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
lk_dome_iso_weight_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
lk_dome_weight_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
LK_DomeHelper(core::scoring::lkball::LK_DomeEnergyCOP const &lk_dome, Real lk_dome_weight, Real lk_dome_iso_weight, Real lk_dome_bridge_weight, Real lk_dome_bridge_uncpl_weight, Real lk_ball_bridge2_weight, Real lk_ball_bridge_uncpl2_weight)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper
memory_use() const	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
occlusion_min_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
occlusion_span_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
partial_score_scaler_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
pos_water_pair_to_score_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
prepare_lkd_infos_and_assign_waters(core::pose::Pose const &pose, core::pack::rotamer_set::RotamerSets const &rotamer_sets, utility::vector1< utility::vector0< core::scoring::lkball::LKD_ResidueInfo >> &lkd_infos, utility::vector1< utility::vector0< MyWaterHolder >> &waters, utility::vector1< utility::vector0< utility::vector0< Size >>> &water_assignments)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
prepare_score_data(core::pose::Pose const &pose, core::pack::rotamer_set::RotamerSets const &rotamer_sets, utility::vector1< utility::vector0< core::scoring::lkball::LKD_ResidueInfo >> const &lkd_infos, utility::vector1< utility::vector0< MyWaterHolder >> const &waters, utility::vector1< utility::vector0< utility::vector0< Size >>> const &water_assignments)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
prepare_simple_rotamer_values(utility::vector1< utility::vector0< MyWaterHolder >> &waters, utility::vector1< utility::vector0< utility::vector0< Size >>> const &water_assignments)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
reinit_with_resvect(utility::vector1< core::Size > const &current_rotamer_ids, bool skip_reset=false)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
reset_calculation()	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
resize_arrays(core::pose::Pose const &pose)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
restore_from_shadow()	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
riww_at_pos_index_list_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
rotamer_interacts_with_waters_at_pos_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
rotamer_to_waters_masks_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
save_to_shadow()	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
score_data_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
score_scaler_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
seqpos_num_rotamers_32_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
seqpos_num_unique_waters_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
seqpos_to_riww_at_pos_index_list_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
seqpos_to_rotamer_to_waters_masks_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
seqpos_to_water_to_pwp_index_list_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
shadow_current_rotamer_at_seqpos_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
shadow_current_score_at_seqpos_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
shadow_current_water_interact_sum_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
shadow_current_water_occl_sum_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
shadow_current_waters_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
shadow_mismatch_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
shadow_total_score_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
total_score_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
update_other_waters(Size position, bool adding)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
update_other_waters_inner(int8_t occlusion_delta, int16_t interact_delta, uint32_t water_seqpos, uint32_t total_water_offset)	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	protected
water_to_pwp_index_list_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private
waters_per_seqpos_	core::pack::guidance_scoreterms::lk_dome::LK_DomeHelper	private