| add_metadata(components::StructureData &sd, core::Size const align_count, std::string const &template_segment, std::string const &target_segment, core::Size const target_resid) const | protocols::denovo_design::movers::AlignResiduesMover | private |
| add_target_selector(core::select::residue_selector::ResidueSelector const &selector) | protocols::denovo_design::movers::AlignResiduesMover | |
| add_target_selector(core::select::residue_selector::ResidueSelectorCOP selector) | protocols::denovo_design::movers::AlignResiduesMover | |
| add_template_selector(core::select::residue_selector::ResidueSelector const &selector) | protocols::denovo_design::movers::AlignResiduesMover | |
| add_template_selector(core::select::residue_selector::ResidueSelectorCOP selector) | protocols::denovo_design::movers::AlignResiduesMover | |
| align_residues(core::pose::Pose &pose, core::Size const align_count, core::select::residue_selector::ResidueVector const &template_subset, core::select::residue_selector::ResidueVector const &target_subset) const | protocols::denovo_design::movers::AlignResiduesMover | private |
| align_residues(core::pose::Pose &pose, core::Size const align_count, core::Size const template_resid, core::Size const target_resid) const | protocols::denovo_design::movers::AlignResiduesMover | private |
| align_residues(core::pose::Pose &pose, core::Size const jump_idx, core::Size const template_resid, core::Size const target_resid, core::Size const res_with_torsions) const | protocols::denovo_design::movers::AlignResiduesMover | private |
| AlignResiduesMover() | protocols::denovo_design::movers::AlignResiduesMover | |
| apply(core::pose::Pose &pose) override | protocols::denovo_design::movers::AlignResiduesMover | virtual |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clear_target_selectors() | protocols::denovo_design::movers::AlignResiduesMover | inline |
| clear_template_selectors() | protocols::denovo_design::movers::AlignResiduesMover | inline |
| clone() const override | protocols::denovo_design::movers::AlignResiduesMover | virtual |
| compute_target_residues(core::pose::Pose const &pose) const | protocols::denovo_design::movers::AlignResiduesMover | private |
| compute_template_residues(core::pose::Pose const &pose) const | protocols::denovo_design::movers::AlignResiduesMover | private |
| copy_residue(core::pose::Pose &pose, core::Size const resid_has_info, core::Size const resid_wants_info) const | protocols::denovo_design::movers::AlignResiduesMover | private |
| create() | protocols::moves::Mover | virtual |
| current_job_ | protocols::moves::Mover | private |
| current_tag_ | protocols::moves::Mover | private |
| delete_residues(core::pose::Pose &pose, core::select::residue_selector::ResidueVector const &resids) const | protocols::denovo_design::movers::AlignResiduesMover | private |
| fresh_instance() const override | protocols::denovo_design::movers::AlignResiduesMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::denovo_design::movers::AlignResiduesMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| id_ | protocols::denovo_design::movers::AlignResiduesMover | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| info_ | protocols::moves::Mover | private |
| input_pose_ | protocols::moves::Mover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| last_status_ | protocols::moves::Mover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::denovo_design::movers::AlignResiduesMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| native_pose_ | protocols::moves::Mover | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::denovo_design::movers::AlignResiduesMover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::denovo_design::movers::AlignResiduesMover | static |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| ResidueSelectorCOPs typedef | protocols::denovo_design::movers::AlignResiduesMover | |
| ResidueVectors typedef | protocols::denovo_design::movers::AlignResiduesMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_id(std::string const &id) | protocols::denovo_design::movers::AlignResiduesMover | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const override | protocols::denovo_design::movers::AlignResiduesMover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| target_selectors_ | protocols::denovo_design::movers::AlignResiduesMover | private |
| template_selectors_ | protocols::denovo_design::movers::AlignResiduesMover | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| type_ | protocols::moves::Mover | private |
| ~AlignResiduesMover() override | protocols::denovo_design::movers::AlignResiduesMover | |
