protocols::frag_picker::DiversifyCrmsdSelector Class Reference

selects fragments by running several selectors More...

#include <DiversifyCrmsdSelector.hh>

Inheritance diagram for protocols::frag_picker::DiversifyCrmsdSelector:

Public Member Functions
	DiversifyCrmsdSelector (core::Size frags_per_pos, core::Real cutoff)
	Constructor sets the desired number of fragments and crmsd cutoff. More...
void	select_fragments (ScoredCandidatesVector1 const &, ScoredCandidatesVector1 &) override
	Selects desired number of fragments from a given set of candidates. More...
	~DiversifyCrmsdSelector () override=default
Public Member Functions inherited from protocols::frag_picker::FragmentSelectingRule
	FragmentSelectingRule (core::Size frags_per_pos)
	Constructor sets the desired number of fragments. More...
core::Size	frags_per_pos ()
	Says how many fragments will be selected for each position in a query sequence. More...
	~FragmentSelectingRule () override=default

Private Member Functions
void	copy_coordinates (FragmentCandidateOP src, ObjexxFCL::FArray2D_double &dst)

Private Attributes
core::Real	cutoff_
ObjexxFCL::FArray2D_double	fi_
ObjexxFCL::FArray2D_double	fj_
ObjexxFCL::FArray1D_double	weights_

Detailed Description

selects fragments by running several selectors

Constructor & Destructor Documentation

DiversifyCrmsdSelector()

protocols::frag_picker::DiversifyCrmsdSelector::DiversifyCrmsdSelector ( core::Size  frags_per_pos, core::Real  cutoff  )

inline

Constructor sets the desired number of fragments and crmsd cutoff.

References cutoff_.

~DiversifyCrmsdSelector()

protocols::frag_picker::DiversifyCrmsdSelector::~DiversifyCrmsdSelector ( )

overridedefault

Member Function Documentation

copy_coordinates()

void protocols::frag_picker::DiversifyCrmsdSelector::copy_coordinates ( FragmentCandidateOP  src, ObjexxFCL::FArray2D_double &  dst  )

private

References protocols::kinmatch::xyz().

select_fragments()

void protocols::frag_picker::DiversifyCrmsdSelector::select_fragments ( ScoredCandidatesVector1 const &  in, ScoredCandidatesVector1 &  out  )

overridevirtual

Selects desired number of fragments from a given set of candidates.

Implements protocols::frag_picker::FragmentSelectingRule.

References core::conformation::membrane::in, core::conformation::membrane::out, core::scoring::rms, and protocols::frag_picker::trDiversifyCrmsdSelector().

Member Data Documentation

cutoff_

core::Real protocols::frag_picker::DiversifyCrmsdSelector::cutoff_

private

Referenced by DiversifyCrmsdSelector().

fi_

ObjexxFCL::FArray2D_double protocols::frag_picker::DiversifyCrmsdSelector::fi_

private

fj_

ObjexxFCL::FArray2D_double protocols::frag_picker::DiversifyCrmsdSelector::fj_

private

weights_

ObjexxFCL::FArray1D_double protocols::frag_picker::DiversifyCrmsdSelector::weights_

private

---

The documentation for this class was generated from the following files:

• src/protocols/frag_picker/DiversifyCrmsdSelector.hh
• src/protocols/frag_picker/DiversifyCrmsdSelector.cc