core::scoring::methods::FreeDOF_Options Class Reference

#include <FreeDOF_Options.hh>

Inheritance diagram for core::scoring::methods::FreeDOF_Options:

Public Member Functions
	FreeDOF_Options ()
	~FreeDOF_Options () override
void	initialize_from_options ()
core::Real	free_suite_bonus () const
void	free_suite_bonus (core::Real setting)
core::Real	free_2HOprime_bonus () const
void	free_2HOprime_bonus (core::Real setting)
core::Real	free_sugar_bonus () const
void	free_sugar_bonus (core::Real setting)
core::Real	pack_phosphate_penalty () const
void	pack_phosphate_penalty (core::Real setting)
core::Real	free_side_chain_bonus () const
void	free_side_chain_bonus (core::Real setting)
void	show (std::ostream &out) const

Private Attributes
core::Real	free_suite_bonus_
core::Real	free_2HOprime_bonus_
core::Real	free_sugar_bonus_
core::Real	pack_phosphate_penalty_
core::Real	free_side_chain_bonus_

Friends
bool	operator== (FreeDOF_Options const &a, FreeDOF_Options const &b)
std::ostream &	operator<< (std::ostream &out, const FreeDOF_Options &options)

Constructor & Destructor Documentation

FreeDOF_Options()

core::scoring::methods::FreeDOF_Options::FreeDOF_Options

(

)

References initialize_from_options().

~FreeDOF_Options()

core::scoring::methods::FreeDOF_Options::~FreeDOF_Options ( )

overridedefault

Member Function Documentation

free_2HOprime_bonus() [1/2]

core::Real core::scoring::methods::FreeDOF_Options::free_2HOprime_bonus ( ) const

inline

References free_2HOprime_bonus_.

Referenced by core::energy_methods::FreeDOF_Energy::residue_energy().

free_2HOprime_bonus() [2/2]

void core::scoring::methods::FreeDOF_Options::free_2HOprime_bonus ( core::Real  setting )

inline

References free_2HOprime_bonus_.

free_side_chain_bonus() [1/2]

core::Real core::scoring::methods::FreeDOF_Options::free_side_chain_bonus ( ) const

inline

References free_side_chain_bonus_.

Referenced by core::energy_methods::FreeDOF_Energy::residue_energy().

free_side_chain_bonus() [2/2]

void core::scoring::methods::FreeDOF_Options::free_side_chain_bonus ( core::Real  setting )

inline

References free_suite_bonus_.

free_sugar_bonus() [1/2]

core::Real core::scoring::methods::FreeDOF_Options::free_sugar_bonus ( ) const

inline

References free_sugar_bonus_.

Referenced by core::energy_methods::FreeDOF_Energy::residue_energy().

free_sugar_bonus() [2/2]

void core::scoring::methods::FreeDOF_Options::free_sugar_bonus ( core::Real  setting )

inline

References free_sugar_bonus_.

free_suite_bonus() [1/2]

core::Real core::scoring::methods::FreeDOF_Options::free_suite_bonus ( ) const

inline

References free_suite_bonus_.

Referenced by core::energy_methods::FreeDOF_Energy::residue_energy().

free_suite_bonus() [2/2]

void core::scoring::methods::FreeDOF_Options::free_suite_bonus ( core::Real  setting )

inline

References free_suite_bonus_.

initialize_from_options()

void core::scoring::methods::FreeDOF_Options::initialize_from_options

(

)

References free_2HOprime_bonus_, free_side_chain_bonus_, free_sugar_bonus_, free_suite_bonus_, and pack_phosphate_penalty_.

Referenced by FreeDOF_Options().

pack_phosphate_penalty() [1/2]

core::Real core::scoring::methods::FreeDOF_Options::pack_phosphate_penalty ( ) const

inline

References pack_phosphate_penalty_.

Referenced by core::energy_methods::FreeDOF_Energy::residue_energy().

pack_phosphate_penalty() [2/2]

void core::scoring::methods::FreeDOF_Options::pack_phosphate_penalty ( core::Real  setting )

inline

References pack_phosphate_penalty_.

show()

void core::scoring::methods::FreeDOF_Options::show

(

std::ostream &

out

)

const

References free_2HOprime_bonus_, free_side_chain_bonus_, free_sugar_bonus_, free_suite_bonus_, core::conformation::membrane::out, and pack_phosphate_penalty_.

Friends And Related Function Documentation

operator<<

std::ostream& operator<< ( std::ostream &  out, const FreeDOF_Options &  options  )

friend

operator==

bool operator== ( FreeDOF_Options const &  a, FreeDOF_Options const &  b  )

friend

Member Data Documentation

free_2HOprime_bonus_

core::Real core::scoring::methods::FreeDOF_Options::free_2HOprime_bonus_

private

Referenced by free_2HOprime_bonus(), initialize_from_options(), and show().

free_side_chain_bonus_

core::Real core::scoring::methods::FreeDOF_Options::free_side_chain_bonus_

private

Referenced by free_side_chain_bonus(), initialize_from_options(), and show().

free_sugar_bonus_

core::Real core::scoring::methods::FreeDOF_Options::free_sugar_bonus_

private

Referenced by free_sugar_bonus(), initialize_from_options(), and show().

free_suite_bonus_

core::Real core::scoring::methods::FreeDOF_Options::free_suite_bonus_

private

Referenced by free_side_chain_bonus(), free_suite_bonus(), initialize_from_options(), and show().

pack_phosphate_penalty_

core::Real core::scoring::methods::FreeDOF_Options::pack_phosphate_penalty_

private

Referenced by initialize_from_options(), pack_phosphate_penalty(), and show().

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The documentation for this class was generated from the following files:

• src/core/scoring/methods/FreeDOF_Options.hh
• src/core/scoring/methods/FreeDOF_Options.cc